RnoINT0000744 @ rn6
Intron Retention
Gene
ENSRNOG00000046480 | AABR07005779.3
Description
KRAB domain-containing protein ZNF747-like [Source:NCBI gene;Acc:102553962]
Coordinates
chr1:198831272-198831691:-
Coord C1 exon
chr1:198831508-198831691
Coord A exon
chr1:198831386-198831507
Coord C2 exon
chr1:198831272-198831385
Length
122 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
TTTGCTATCTTTCCCTCCAGGAG
3' ss Score
11.96
Exon sequences
Seq C1 exon
ATGGCTCAGCAGATTGCTCCGGGAAGGGCCTCCGCACAGCCTGCGTTCTGTAAGCTCGGGGCTGTGAGCTTCGCGGACGTGGCCGTGTATTTCTCACCGGAGGAATGGGGATGTCTGCGACCGGCACAGAGAGCCCTGTACCGGGAGGTGATGCGCGAGACCTACAGTCTTCTGGGCTCTCTCG
Seq A exon
GTGAGAATCTTCCTGGACGCCTAGGCTAGCACTTCGCGGGACACGGTGGAGCGGAGAGCTGGCGGTCCGGACCAAGTGGGTCGTCCTCACTGACTAATGGGGTTTGCTATCTTTCCCTCCAG
Seq C2 exon
GAGTCCGAGGCGCCAAACCAGCGCTCATCTGCTGGGTGGAGGAAGAGACCGAACTGTGGGGACCCCGTGCCCAGGATCCAGAATTGGCCATGTGCAAGACTGAAGTCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046480:ENSRNOT00000074435:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=66.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGCGTTCTGTAAGCTC
R:
CTTCAGTCTTGCACATGGCCA
Band lengths:
253-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]