RnoINT0000825 @ rn6
Intron Retention
Gene
ENSRNOG00000046602 | AABR07006030.1
Description
NA
Coordinates
chr1:214671229-214671476:+
Coord C1 exon
chr1:214671229-214671294
Coord A exon
chr1:214671295-214671453
Coord C2 exon
chr1:214671454-214671476
Length
159 bp
Sequences
Splice sites
5' ss Seq
TGTAGTGTC
5' ss Score
-47.06
3' ss Seq
GCAAAATGCCAGGGGTGCAGTTC
3' ss Score
-7.27
Exon sequences
Seq C1 exon
GCTAACCACCACAATGGTCTTTTACCTAGAGGCAGGAGTGTGATTCTGAGGCAGGAGGACGCGTGT
Seq A exon
AGTGTCCTGGACTTGGCCAAGACGGGGCCCCAAGTAGAGTGGGCCCGGCAGGGGAAGCTGCTCTGAATCTCTACCCATTCGAGTGGAACAAAATGGGCACGACACCTAACCTATTGAGACCCAAGGCTCTCAAATGGTGGCAAAATGCCAGGGGTGCAG
Seq C2 exon
TTCTGCAGAGTGGCACGGCTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046602:ENSRNOT00000075002:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]