HsaINT1023891 @ hg38
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7512]
Coordinates
chr11:1085068-1085606:+
Coord C1 exon
chr11:1085068-1085323
Coord A exon
chr11:1085324-1085553
Coord C2 exon
chr11:1085554-1085606
Length
230 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
ATCCCTGGCCTTTTCCACAGTGT
3' ss Score
8.71
Exon sequences
Seq C1 exon
ACAAGGATGTGGGCTCCTGCCCCAACTCGCAGGTCTTCCTGTACAACCTGACCACCTGCCAGCAGACCTGCCGCTCCCTCTCCGAGGCCGACAGCCACTGTCTCGAGGGCTTTGCGCCTGTGGACGGCTGCGGCTGCCCTGACCACACCTTCCTGGACGAGAAGGGCCGCTGCGTACCCCTGGCCAAGTGCTCCTGTTACCACCGCGGTCTCTACCTGGAGGCGGGGGACGTGGTCGTCAGGCAGGAAGAACGATG
Seq A exon
GTGGGTACCTGCTCGGGGGTCAGGTGTGGCGTGGGGGCGGGGGAACTCCTTCTGAACCTGCCCCAAGCGGAGACCTGGGAGTCTCTACCTGGGGAAGCTGAGACACCCAAGGCTGAGGGGTGCCTGGGGTGGGGGGCGCTGAGAGGCATCAGGCTCACATCTGCGGGGAAGCTGCTGGCTGTCTGTGGCCGTCCTGCATGGGCCCCGCTCATCCCTGGCCTTTTCCACAG
Seq C2 exon
TGTGTGCCGGGATGGGCGGCTGCACTGTAGGCAGATCCGGCTGATCGGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788:ENST00000361558:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGATGTGGGCTCCTGC
R:
ATCAGCCGGATCTGCCTACAG
Band lengths:
300-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains