Special

RnoINT0000874 @ rn6

Intron Retention

Gene
ENSRNOG00000055996 | AABR07006032.1
Description
NA
Coordinates
chr1:214731574-214732227:+
Coord C1 exon
chr1:214731574-214731684
Coord A exon
chr1:214731685-214732157
Coord C2 exon
chr1:214732158-214732227
Length
473 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GGCTTTGCAATTGGTTCTAGGTG
3' ss Score
7.44
Exon sequences
Seq C1 exon
CCCTATGACAGCAATGCCTTCACTGTGCTGGCTGAGCTGCGGAAGTGTGGATTGACTGAGAGCGAGACTTGTCTGAAGACTGTGACGTTGAACCTGGGTGGGGGGAAGACG
Seq A exon
GTGAGTATCACAGGGAGAGCTGAGGAGAACCCTGGAAGAGGTAGGTCCTGGAAGGTGGAAAGAACATGTTCCCATTGCCTATGACCTCCGCCTAGTCCCTGGATTCACATCCTGAACAGTGAGCCTTAAGTGGAACACAGCGGGTGTTTGATACTGGGACTGCTGGGATTGCACCAGCTGGACCCAAGAAAGAGGACTCAGGCATTTCTATCCAGTACAACTTCTCCATTATTTTTTTTAATATATTAGTTTCTGTTTTTATATTACTTAAGATATGATTCTTTTGAAAGTTTACAAAGTCAGGGCAAGTATGGGACCTGATCTTGAAACACATTTACCTCATGGGGGCTACAGATTTGTAGCCCAAGGTCTCCTAGTGAGCACACTTCACAGCCTGTGTGGGTTACCACGGGACAGTGGAGAGATATTGCTCAGTCCCATACTGATGCCCTTGGCTTTGCAATTGGTTCTAG
Seq C2 exon
GTGATCACAGTGAAAGCCACTGGAGAGGTCTTTGTGAACCAGATCTATACCCAGCTGCCGGTATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055996:ENSRNOT00000085159:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0009420=VWD=FE(23.1=100)
A:
NA
C2:
PF0009420=VWD=FE(14.7=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
ALTERNATIVE
([1])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]