GgaINT0054945 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14166973-14167553:-
Coord C1 exon
chr5:14167443-14167553
Coord A exon
chr5:14167043-14167442
Coord C2 exon
chr5:14166973-14167042
Length
400 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTGCCTTTTCTTGTGGACAGAAC
3' ss Score
7.28
Exon sequences
Seq C1 exon
CTCTGTGACAGCAATGATTTCACTGTTCTGGGTGACATCCACAAGTGTGGTCTGACTGACACTGAGACATGCCTCAAGGGCGTAGCCATCAGTCTAAGCGGAGGGCAAACT
Seq A exon
GTAAGTAGCAAATGCAAACAGCTAATATTCTGCAGTGATGTCTTCCAACCTTAATAAGCAAGTAGTAGGCAAATGACTCATAACAGCACTGACCAATTTTTGTTTTATCTCATTTGAAAATGAATTCAATTTCTGAAAAGAACAAAGCAGATATACTGGAAGCCAAAATCCTCATACTTTTCTGTCATTTAGTTGTCTGTTTAAGCCATCAATGGATCTCTATAATAAAGATTAAAGAAATAGTAAGGGAATCTGAAAATCACCATAGCTGGGAGTCCACCAACTTCCCTCTTTCCTTTCCCCTCCCCCATGCCTTTTCTTTATCTTGAATAATACTAGATATACTACGTTTTACCTTTCCTAAACATGCTTGGTAATCATTGCCTTTTCTTGTGGACAG
Seq C2 exon
AACATTGTGATCCAGCCTTCTGGCAGTGTATTTGTGAATATGATCTACACACAGCTGCCCTTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740:ENSGALT00000010867:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(23.2=100)
A:
NA
C2:
PF0009420=VWD=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]