Special

MmuINT0102401 @ mm10

Intron Retention

Gene
Description
mucin 5, subtypes A and C, tracheobronchial/gastric [Source:MGI Symbol;Acc:MGI:104697]
Coordinates
chr7:141795209-141795915:+
Coord C1 exon
chr7:141795209-141795319
Coord A exon
chr7:141795320-141795845
Coord C2 exon
chr7:141795846-141795915
Length
526 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GGCTCTGGAATTGGTTATAGGAG
3' ss Score
2.98
Exon sequences
Seq C1 exon
CCTTGTGACAGTAATGCCTTCACTGTGCTGGTTGAGCTGCGAAAGTGTGGACTGACGGAAAGTGAGACTTGTCTGAAGACTGTGACATTGAACCTGGGTGGGGGGCAGACG
Seq A exon
GTGAGTATCACAGGGAGAGAGGAGGGGAACCCTGGAAGAGGCAGGTCCTGGAAGGTGGAAAGAAACGTTCACATTTCCAGTTGCCTCTGCCTAGTCCCTGGATTCACCCCCTGAACAATGATCACATCCACTGTTTGTGGGTCTTTGGAGACTACCCTTAAGTAGAATATTGTAGGTGTTTGACTCTGGGGCTCCTGTAATTGCACCACTAGGACCCAGGAAAGAGGACTCCAGCATTTCTATTCAGTTCAACTTCTCCATTGAAGTTTTTTTTTAAAGACAAATACATTAGTTTCTGTTTTTATATTACTTAAGATATGATTCTTTTGAAAATTTAGAAAGTCAGGGTAAGTATAGGGTCTGATCGTGGAACACAAGTTTGCCTCATGGGGACTACAGATTTGTAGCCCAAGGTCTCCTAGACCTATCGAGCACACTTCACAGCCTGTGTGGGTTACCAAGGTTCAGTGAGGGAGATATTGCCTCAGTCCCAAACTGACCCCCTTGGCTCTGGAATTGGTTATAG
Seq C2 exon
GAGATCATGGTGAAAGCTACTGGAGAGGTCTTTGTGAACCAGATCTACACCCAGTTGCCAGTGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037974:ENSMUST00000155534:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0009420=VWD=FE(23.2=100)
A:
NA
C2:
PF0009420=VWD=FE(14.8=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
([1])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types