RnoINT0001655 @ rn6
Intron Retention
Gene
ENSRNOG00000060973 | AABR07013843.1
Description
NA
Coordinates
chr2:259149018-259149745:-
Coord C1 exon
chr2:259149491-259149745
Coord A exon
chr2:259149090-259149490
Coord C2 exon
chr2:259149018-259149089
Length
401 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
GGTTCCTCTTATACCGCCAGAGG
3' ss Score
4.73
Exon sequences
Seq C1 exon
CGCCATGGTCTGGCAGTGTGTTTAGTGCTCACTACCATGTGCACCAGCTTGTTGCTCGTGTACAGCAGCCTCGGCAGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGACTGCGACTGGCAGCACGCAGCTTGTGGAGAGCAGTCCCCAGCCACATAGAACCGCCCCCGTAGGACCCCGGCAGCTAGACGGATACCTCGGTGTAGCAGACCACAAG
Seq A exon
GTGACAGCTTGTGCGCCTCCCTGCCCACCGCCGCTCGGCCTGGGCACTCCGTACCCCTGACCCTTCTTCCTTCCTGGGGCGGTGAGATGCGGGAGCAGCTGTTAGTTCTGGAAGCAGGAAGGTGGTGGACCAGTTAGGGCAGGAAGGGCTGCATGCTAGTTATGACTTTGTATTCCAAGAAGGATGCAAAGTTTATCAGGGAATGGGAATGGTGTGAGTGGATCCGGAGCCCCAGTGGTCCTGGTCTAGATCTGGACACCCAGCAATAGCTGCAAACGGATGTTGAATTTCTGGAGCCTAGTATTCTCCAGCCAAGCCTGTGGGGGTGGGGGTAGGGTGGGGGTTAGGAGGAAACCAGACTGGTGCAGGAACTAGCCCCATGGTTCCTCTTATACCGCCAG
Seq C2 exon
AGGGGAGAAGAGAGAGCCTCTATGGCAGCTCAGTTCCACAGGTTCTCCTCTGATCTCTGCTGGGGACTGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060973:ENSRNOT00000085892:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.694 A=NA C2=0.292
Domain overlap (PFAM):
C1:
PF0000116=7tm_1=PD(91.9=67.1),PF146551=RAB3GAP2_N=WD(100=82.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGTCTGGCAGTGTGTTT
R:
CAGTCCCCAGCAGAGATCAGA
Band lengths:
322-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]