RnoINT0002436 @ rn6
Intron Retention
Gene
ENSRNOG00000055239 | AABR07024734.1
Description
NA
Coordinates
chr16:13000656-13001219:+
Coord C1 exon
chr16:13000656-13000897
Coord A exon
chr16:13000898-13001023
Coord C2 exon
chr16:13001024-13001219
Length
126 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CCACTTTGATCTCTTTTCAGGAT
3' ss Score
10.59
Exon sequences
Seq C1 exon
TAATAGAACCACCCTTTTCAAATGACCTAACAATACAGAACCATGGTAACCATGCAACTCACTGTTTACAGCAAGGTCTGCAGGCTCACTTGTTAGAGACAGTAGAGAGGGCAGGATGTTGTCTTGCTGTCCTCAAGAAGGACAACAGGGAAGGCCACAATGCTGTCTGGAGGCACAGGCTTCACTCTTGCCTTCAACACCTTTGGCCATTTTCCCAATACAGTGGTTACCACATAGACCAG
Seq A exon
GTAACCACTCTGTTGTCTCTGGGTGTTTGGTTTAGAAATAATTCAGGGAAATTTGGAATAAGGAGAACCAATCAGACCTTTGTACATCTGTGCCAGTTTGACCCCTCCACTTTGATCTCTTTTCAG
Seq C2 exon
GATGAGAATGCTTCTCTCAATAGAGCCTGATGGAGTCCAGGAGGGAGTCATACATCAGGGCCCAGACTGTGGTTGAGCAGATGAGCACGCTGGTGCCTCCTCTGCATGAAGGGGACCCCTTGGTTGTCCTAACTTTTCTGTCTACATATAGAAGCTTTGTGACACCCCTTCAGGTATTGGACCTGCTGTTTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055239:ENSRNOT00000084235:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCACAGGCTTCACTCTTG
R:
CCTGAAGGGGTGTCACAAAGC
Band lengths:
247-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]