RnoEX0000114 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr16:12935143-13098122:-
Coord C1 exon
chr16:13098035-13098122
Coord A exon
chr16:12947074-12947173
Coord C2 exon
chr16:12935143-12935266
Length
100 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCTGGCTTCTTTCAGGGG
3' ss Score
10.4
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
Exon sequences
Seq C1 exon
ACCACGAAATTGAGGCTGGCCCCATCACCGGCGCCATCAGCAAAGGGCAGCTAGAAGGCAAAGCGGTCGGTGCGGCCACCCTCATCAG
Seq A exon
GGGAAGATGTAGAACTCAGCTCCTCCTACACTGTGCTTACCTGGATGCTGCAATGCTGCCATGCTCTGCCTTGATGATAAGGGACTGAACCTCTGAACCT
Seq C2 exon
GGAGAAATAGATGCTGGAGGCAGACTCACTGACAGGAAGCCAAAGCTGACCTGGCCTCCCATCATCTGATTCCCTGCATGTGTGGTTGGCTCCAGGGAATAGCCTGTCCTCCTTCCTACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
Rn.127335_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACGAAATTGAGGCTGGC
R:
TTGGGTAGGAAGGAGGACAGG
Band lengths:
211-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]