RnoINT0002437 @ rn6
Intron Retention
Gene
ENSRNOG00000055239 | AABR07024734.1
Description
NA
Coordinates
chr16:13001024-13002622:+
Coord C1 exon
chr16:13001024-13001219
Coord A exon
chr16:13001220-13002474
Coord C2 exon
chr16:13002475-13002622
Length
1255 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTCTCTCTGGTGTTCTCTAGGTA
3' ss Score
11.37
Exon sequences
Seq C1 exon
GATGAGAATGCTTCTCTCAATAGAGCCTGATGGAGTCCAGGAGGGAGTCATACATCAGGGCCCAGACTGTGGTTGAGCAGATGAGCACGCTGGTGCCTCCTCTGCATGAAGGGGACCCCTTGGTTGTCCTAACTTTTCTGTCTACATATAGAAGCTTTGTGACACCCCTTCAGGTATTGGACCTGCTGTTTGGGAG
Seq A exon
GTGAGTGCCCATCTCCAAGTCCATAGTTCTCAGAGCATCCTGATGGTTTCAGGAGTTTCCCATCCTTCCTGTCTCCTTCTTTCTGTCTCTCTGTTACACCCCCCTCTCTCTGTGTCTCTGCTTCTGTTTCTATTTCTCTCTCTCTCTCCCTCTCTCTCTCTTGCTTTCTCTCTCTTTTTCTCTTTATTTCTATTTGTGTGTATGCATGTCTGTTTGTGTGTGTATCTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGTGTGCACGAATAGCTGATAGTTCTCAGAGCTTCTTGTGGGTTTCAGAAATTTCCCTTCTTAGTCTTGCTCTGTGTCTCCCTCTCTCTCTTCATTTACCTCTCTCTCTCTCTTTTATCTGTCTTTCTCTCATTCTCTCTCTGTCTCTCTTTCTGTTTCTATTTGTTTCTCTTGCTGTCTCTTTTTTATTCTCGTTCTATATTTCTGCCTCTCCCCCTCCCCGTCTCTGTCTGTCTGTCTCTGTTTCTCTCTCTCTCTGTCTCTCTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTCTGTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTATTTGTGTTTGTCTGTGTTGCAAACCTTCTCTGTCTTTTCCTCTCTCTGTCCTACATCTCCCCATCTTTCCTGTCTCCTCCATTTTTTCACTCTCCCTGTTCGGCTAAGGCTCTATCTGTTTCCCTAATTGAGTCTCTGTCTCCATCTCAGTCTTTGTCTCTGTCTCCATCTGTTTTTTTTTTTTTGTCTACATAATACTCAGACCCCATTTTAAGCAATTCCTTCTCCCACGCTTGGTCCAAGTGATTGGTCTGTCCTGATCTGGGAACCTAAAGTGAATGTAACTTACCCCTCTACCTTGAAAAAGCATTTTATCCTTCACCCAATATTAATGAGGATTTTGATAATGCAATTCTCTTGTATATAAAGGAAGTCCTAGAAATTTTAGAGTACCCAAGAGAGATGTGTCCAAAGTAGAGGCCCATGAAGGATAATCCAGGAAAGCATGTGACCAAGGAGATGTCTTGATAGAGATGCCTGCATTCAACACTTGCAGATACATTGAAAGCACCTATTGTGTACAGGTGAAGTACTAATTCTGAGAATAGACAGGACTGCAAGTATTAGGTGAGGGGCATGGGACTTTAGAGGTGACATTCTCTCTGGTGTTCTCTAG
Seq C2 exon
GTACGCATACTTCAGCCTTTATTCTAAAGAGGATGAACAAGTGAAGAACACCCTCTGTAGCTTCTTGGAAACATGGATGGACAAGAAACCTGAGGACTTTTGTGACCCATCAGACCTGTTCACTTTGAAACTCCTGAGTCCTACTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055239:ENSRNOT00000084235:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAGAGCCTGATGGAGTCCAGG
R:
TCAAGTAGGACTCAGGAGTTTCA
Band lengths:
326-1581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]