HsaINT1028821 @ hg38
Intron Retention
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:HGNC:9842]
Coordinates
chr9:133109626-133110489:-
Coord C1 exon
chr9:133110296-133110489
Coord A exon
chr9:133109722-133110295
Coord C2 exon
chr9:133109626-133109721
Length
574 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACACTAGACGTCATAAGCAGGTA
3' ss Score
-0.26
Exon sequences
Seq C1 exon
TATGAGAATGAGTCGGCCCTGAACCTTTATGAGACTTGCAAGGTGCGGACCGTGAAGGCTGGCACGCTGGAGAAGCTGGTGGAGCACCTGGTGCCAGCCTTCCAGGGCAGCGACCTCTCCTACGTCACCATCTTCCTGTGTACCTATAGAGCCTTCACCACCACCCAACAGGTCCTGGACCTGCTGTTCAAAAG
Seq A exon
GTGAGCATGAGCCCTCCACTGCACAGGGTGCACAGGGGCCCTCGCCCCCACCCCCACCTGGCTGCGGGTCTTGGCAATGCTGATTCACCTCTCTGAGCCTCGCTTTGCTCATATGAAAGAGAAACTGGAGTGCTAAGAGGACCTCATGGGGTTGTCACCATGCCTGGGCGGGATGAGGCGTGGAAAGTGCTCCCTCAACGCCTGGCCCTGTAGGGAATGGGCTGCGGGGCTGTGGTGCTCGTTTTTATGATTTTCCTGTCCCCCATGGGGAAGCTCTCTGCCCCAAGCCTCTCTTGTATGTGGCCTTGGGCGAAGCAGTTTTCCCACTTGTCAAGGAGATTCCGGATTCTATCTGGGGGCTGTTGGAGGGACCCAAGGGGCGCTCAGATAGCTGGGAAGGAGCTGGTTGGGACTTATTCATTGAACAAATATATATGAAGCACCTACTGTGTGCTGGCCCTTTTCTAGGCATTTAATATAATTTGATGAAAAAAAGCAAAAAAAAAAATCCCTGCCCTCCTGGGCCTCCGTTCTAGTCGGAGAGTCAGACAGTAACACTAGACGTCATAAGCAG
Seq C2 exon
GTACGGTAGATGTGACGCCCTCACGGCCTCCTCTAGATACGGCTGCATCCTCCCCTATTCCGACGAGGATGGTGGACCCCAGGACCAACTTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271:ENST00000372050:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(47.5=73.8)
A:
NA
C2:
PF0061815=RasGEF_N=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAATGAGTCGGCCCTGA
R:
TTAAGTTGGTCCTGGGGTCCA
Band lengths:
286-860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains