GgaINT1000508 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4E7]
Coordinates
chr17:6794894-6795286:-
Coord C1 exon
chr17:6795093-6795286
Coord A exon
chr17:6794969-6795092
Coord C2 exon
chr17:6794894-6794968
Length
124 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCTTCTTCCAACCCCCTCAGGTA
3' ss Score
8.81
Exon sequences
Seq C1 exon
TTTGAGAATGAGTCGGCCTTAAACCTCTATGAGACGTGTAAGGTGCGGACGATAAAAGCTGGGACCTTGGAGAAGCTGGTGGAGTACCTGGTTTCAGCCTTCAAGGGCAACGATTCCACCTATGTCACCATCTTCCTGTGCACTTACCGGGCCTTCGCCACTACCAAGCAAGTGCTGGACCTGCTGCTCAACAG
Seq A exon
GTGAGGCGGCCGTGCCCCAAAATGCAGGTAGAAGTGGCTGATGTCTGAGCATCCTCAACTAGCAGAGCTCCAGCATCTTCTGCCGTGTCTTGGAGGTCTGATGGGCTTCTTCCAACCCCCTCAG
Seq C2 exon
GTATGGCAAACTGCACGTGCAGACGAACGGGGACCATGCCAGGCATGTTGTGGACGAGAGGATGGAGCTGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412:ENSGALT00000005397:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(45.3=73.8)
A:
NA
C2:
PF0061815=RasGEF_N=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGAGACGTGTAAGGTGCGG
R:
TCTTCAGCTCCATCCTCTCGT
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]