BtaINT0009812 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MX86]
Coordinates
chr28:13087995-13088870:-
Coord C1 exon
chr28:13088677-13088870
Coord A exon
chr28:13088055-13088676
Coord C2 exon
chr28:13087995-13088054
Length
622 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CGCCTCCTGGCCTCCTGTAGGTA
3' ss Score
9.06
Exon sequences
Seq C1 exon
GGGGAAAGCGTGTCCACAGGGGACAGGAATGAGACCTACAGTGTGTGGAGTGTCCGGAGACGCAGACTGGAGATGTTGGTGGACAACCTGGTGCCTGCCTTCCTGGGCGGTGACCCCGCCTACCTCCCCACATTCCTGGGCACCTACAGGGCTTTTGGCACCACCCAGCAGGTGCTGGACCTTCTCTTCATGAG
Seq A exon
GTGAGCAGTACCCCTCCCCTACTGGGTACTCGGGGAGACCTGGCCACCTTCCAGCTGTGAGTCATGGGAACATCTCTCTACCTCTGTGAGCCCCAGTTGGCTCCCCTCTTCACTTGAGGGGAAAGGAAGGAGCAGCCCCCTGGGGGGACTAAGTGGGTGCATCCTGGAAAGTGCTTTCTGGGAACTTGGACCCCTGGAATGGCTGTGGTTGTGCTGAGACATCACATTCCTCCTCCCCTCGAGGAAGCCTCTGTCTCCGTTGTCTCTTTGCCTTTGACTTGGGCCCAAAGCATTTTCCCAATTGCAAGGTGAGGTGTAAGTGGTGCCCTGTCCTGGGTGAGTGAGAACAAGGGTCCCTGGGAGTGATCCATGGTGCCCCAGGCACTCGGATGGGGCTGGTTGGGCTCATTTGTTCTTGAAATATAGAGGAAGGCGCACGAGGTGCAGGCACTTTTCTAGGAAGAAGCATGACATAATGCATCGAGCAGACAGTAGTCCTGCCCCCCAGGGCTTCAGTTCTCCGGGGTGGGGGTTGTGGGCGGGAGGGAACCCTGTCACACTAGCCATCACATCCAGGCGTGTCTGCAGTACTGTCCATGTGACGCCTCCTGGCCTCCTGTAG
Seq C2 exon
GTACGGATGCATCCTCCCTTACTGCGATGAGGATGGTGGACCCCTGCACCAGCTGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047340:ENSBTAT00000065844:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(46.6=73.8)
A:
NA
C2:
PF0061815=RasGEF_N=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAAAGCGTGTCCACAG
R:
ATTTTCAGCTGGTGCAGGGG
Band lengths:
254-876
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]