RnoINT0123938 @ rn6
Intron Retention
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7119266-7120012:+
Coord C1 exon
chr3:7119266-7119459
Coord A exon
chr3:7119460-7119952
Coord C2 exon
chr3:7119953-7120012
Length
493 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCCCTCACGGCCTCCTCTAGATA
3' ss Score
5.41
Exon sequences
Seq C1 exon
TGCGAGAATGAGTCAGCTCTGAACCTCTACGAGACTTGCAAGGTGCGCACGGTGAAGGCCGGTACTCTGGAGAAGCTGGTGGAACACCTGGTGCCTGCCTTCCAGGGCAGTGACCTTTCCTACGTCACCGTATTCCTGTGCACCTACAGAGCCTTCACAACCACTCAGCAGGTGCTAGACCTGCTGTTCAAAAG
Seq A exon
GTGAGCACCCCCTCCAGACCCAGGGACACCCTTCCTCCTGGCTACATCTTGGGGATGCCTTGTGTCTCTCTGAGCCCCAGTTTGATGGTAAGCATCCTCATAGCTAGATGGGCTCTGCCAGGACGGCCCCAGCCTGGGCTGTCAAGGCCTATGGGGTTTATATGACTTTCCCTTCCTCTGTGGAGAAGCTTTCTCTCCTCAGCCTCAGGCTAAGTGGGTTCCCTACCTAGAAAGGAAGGAGGCCTCAACCTAGATATACACAGAGCAAGGATGGCCCTGTGGTAGTCAACTGAGAGGCCCCAGGTCTGCTGAAATGCCTGAGCTTCTAAAACATCTGCTGTGCTTAGCCATGCTGCCAGGCACTTAACTCTGTGACAAGAGCAAAGAGTCAGTCCCTGCCTCCCTGGGCTCCATTCCCATCAGGGAGTTGACCAGTAACACTAGACATCGTAAGCAGGTACGGTAGATGTGACGCCCTCACGGCCTCCTCTAG
Seq C2 exon
ATATGGCTGCATCCTTCCCTACTCCAGTGAGGACGGCGGACCACAGGACCAACTCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219:ENSRNOT00000013809:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(47.5=73.8)
A:
NA
C2:
PF0061815=RasGEF_N=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGAATGAGTCAGCTCTG
R:
TTTTTGAGTTGGTCCTGTGGTCC
Band lengths:
254-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]