RnoEX0001922 @ rn6
Exon Skipping
Gene
ENSRNOG00000039624 | AABR07024732.1
Description
NA
Coordinates
chr16:12955826-12957777:+
Coord C1 exon
chr16:12955826-12956043
Coord A exon
chr16:12956169-12956365
Coord C2 exon
chr16:12957018-12957777
Length
197 bp
Sequences
Splice sites
3' ss Seq
CCACTTTGATCTCTCATCAGGGT
3' ss Score
8.27
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CACACAGCCAACTGCTTAGAGCCAGCCGACCAGGCTCCCTTGTCTGAGACCCTAGAGGAAGCAGGATGTTTTATTTTTGCTGTTTTCAGACTACTCAAGTCACAGGCCACAAGAAAAACAACAGAAAAGGCTGTGGCTGTAGCTGTAGTCACAGGGTTTACTCTTACCTTCAACAGCTCTGGCCATGTACCCGAAAGAAGGCAAACCGCAAAAGCCAG
Seq A exon
GGTGAGAATGCATCTGTCTCAGAAGACCAGAGGGAGCGTTGTAGAGAGTTAAGCATAAGTGCAGACACATTGCAAAAGTTGGTGGAGCACTTGGTGCCTTCCCTGCAGGGTGGGGACCCCTTCTTTGTCCCTGCCTTTCTCTCCACATACAGAAGGTTTGCCACCCCGCTGCAGGTGCTGAATCTGCTGTGTAAGCG
Seq C2 exon
CTATGAATACTTTAGCTCTAATAATGAAGAGGATGAACAAGTGAAGAACACCTTCTGTAGCTTCCTGAAAACATGGATGGACAAGAACCCTGAGGACTTTTGGGATCACTCAGACCTGCTCCCTCTAAAATACCTGAAGACATTCTTGAGTATGAACATGCCAGATTCAGATCTCATTGTCCATGTCAATAAGCTCCTGACCCAGTTGCAGAACGATCAGTACAACATTCCATAAGCCAAAGATGAGGAAGACTTAGATATGGGGAGTGACACATCCTCATAGCCACAGTTTGAAGGGTATTAACCAGTAGTGAAAACAGACACTCTGAAGCCAGAACCAACTTGAGCAGCAGAGCTAGAGAGTACAAAAGTCACCAGAAGATGCTGTGACACATGTATAACTGCAGCTAGATGTATCAGCAGCAGTCCAGGCAGCAGGCCAGAGAGCAACTGTGACACCTGTGTCTTAGCCTGTCTGTAGATACAGTGTATCTTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039624_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(48.5=72.7)
C2:
PF0061815=RasGEF_N=PD(50.5=63.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGTACCCGAAAGAAGG
R:
GTTCTGCAACTGGGTCAGGAG
Band lengths:
252-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]