MmuEX6040873 @ mm10
Exon Skipping
Gene
ENSMUSG00000041068 | 4930596D02Rik
Description
RIKEN cDNA 4930596D02 gene [Source:MGI Symbol;Acc:MGI:3588288]
Coordinates
chr14:35809488-35811978:-
Coord C1 exon
chr14:35811798-35811978
Coord A exon
chr14:35811463-35811659
Coord C2 exon
chr14:35809488-35810269
Length
197 bp
Sequences
Splice sites
3' ss Seq
CCATCTTGATCTCTCACCAGGGT
3' ss Score
8.14
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CTCCCTTGTCTGAGACCCTAGAGGAAGGAGGATGTTCCTTTGCTGTCTTCGGACTACTCGAGGCTCAGGCCACAGGAAAAACAACAGGGAAGGCCGTGGTGGTGTCTGGAGGCGTAGGGTTCACTCTTCTCTTCAACACCTCTGGCCATTTGCCCGAAAGAAAACAAACCACAAAGACCAG
Seq A exon
GGTGAGAATGTATCCGCCCCAGAAGATCCAAGGGAGCACTGTACACAGTCACATGTCAGTGCAGACACGTTGAAAAAGCTGGTGAACCACTTGGTGCCTTCCCTGCAGAGTGGGGACCCTTTCTTCATCCCTGCATTTCTCTCCACATACAGAAGGTTTGCCACCACCCTGCAGGTGCTAAATCTGCTGTTCAAACG
Seq C2 exon
CTATGAATACTTCCGCCCTAATTCTGAAGAGGATGAACAAGTAAAGAACACCCTTTGTAGCTTCCTGAACACATGGATGGACAAGAACACTGAGGACTTCTGTCAGACCTCAGACCTGCTCCCTCTAAATTATCTGAAGACCTACTTGAGCATGAACATGCCAGATTCGGATCTTAATGTCCGTGTCACTAGGCTCCTGACCCAGTTGCAGAAAGAACAGGCCAACGTGTCACAGGCCAAAGATGAGGAAGACTCAGATCTGGAGAGCAACACATCCTCATACCCAGAGCTTGAAGGATATTGACTAGCAGGGAAAACAGCCATTCTGGAACCAGAACCAACTTGTGTACCAGAGCTGAAGAGCACAAAAACCACCAGAAGTTTCTGTGACCCACGTTTAGCTACAGCCAAATGTGTCAGCAGCTGTCTAGCCAGCACACCTGATAGCTGCTGTGGAACCTGTGTCTCAGCATGTCTGTAGATACAGTGTATCTTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041068-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=0.258 C2=0.277
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(49.0=72.7)
C2:
PF0061815=RasGEF_N=PD(50.0=48.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGACTACTCGAGGCTCAG
R:
GCAGGTCTGAGGTCTGACAGA
Band lengths:
253-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types