HsaEX6063713 @ hg38
Exon Skipping
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:HGNC:9842]
Coordinates
chr9:133109626-133112152:-
Coord C1 exon
chr9:133112042-133112152
Coord A exon
chr9:133110296-133110489
Coord C2 exon
chr9:133109626-133109685
Length
194 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTGTCCCACCCCAGTAT
3' ss Score
7.89
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGCTCCACGCAGGAGATCGGTGAGGAGCTGATCAACGGAGTCATCTACTCCATCTCCCTGCGCAAGGTGCAGCTGCACCACGGAGGCAACAAGGGGCAGCGCTGGCTCGGG
Seq A exon
TATGAGAATGAGTCGGCCCTGAACCTTTATGAGACTTGCAAGGTGCGGACCGTGAAGGCTGGCACGCTGGAGAAGCTGGTGGAGCACCTGGTGCCAGCCTTCCAGGGCAGCGACCTCTCCTACGTCACCATCTTCCTGTGTACCTATAGAGCCTTCACCACCACCCAACAGGTCCTGGACCTGCTGTTCAAAAG
Seq C2 exon
ATACGGCTGCATCCTCCCCTATTCCGACGAGGATGGTGGACCCCAGGACCAACTTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271-'13-18,'13-10,14-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(47.5=73.8)
C2:
PF0061815=RasGEF_N=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCAGGAGATCGGTGAGG
R:
TTAAGTTGGTCCTGGGGTCCA
Band lengths:
162-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains