GgaEX7009800 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4E7]
Coordinates
chr17:6794894-6795783:-
Coord C1 exon
chr17:6795673-6795783
Coord A exon
chr17:6795093-6795286
Coord C2 exon
chr17:6794894-6794968
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTCCTGTCCCAGCAGTTT
3' ss Score
6.77
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGCTCCACACAGGAGATTGGAGAAGAGCTGGAGGATGGTGTAATCTACAGCATATCACTGCGCAAAGTGCAGCTCCATCACACAGCCAACAAGGGGCAGCGGTGGCTGGGG
Seq A exon
TTTGAGAATGAGTCGGCCTTAAACCTCTATGAGACGTGTAAGGTGCGGACGATAAAAGCTGGGACCTTGGAGAAGCTGGTGGAGTACCTGGTTTCAGCCTTCAAGGGCAACGATTCCACCTATGTCACCATCTTCCTGTGCACTTACCGGGCCTTCGCCACTACCAAGCAAGTGCTGGACCTGCTGCTCAACAG
Seq C2 exon
GTATGGCAAACTGCACGTGCAGACGAACGGGGACCATGCCAGGCATGTTGTGGACGAGAGGATGGAGCTGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(45.3=73.8)
C2:
PF0061815=RasGEF_N=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACAGGAGATTGGAGAAGAGC
R:
TTCAGCTCCATCCTCTCGTCC
Band lengths:
178-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]