HsaEX6063713 @ hg19
Exon Skipping
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:9842]
Coordinates
chr9:135985013-135987539:-
Coord C1 exon
chr9:135987429-135987539
Coord A exon
chr9:135985683-135985876
Coord C2 exon
chr9:135985013-135985108
Length
194 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTGTCCCACCCCAGTAT
3' ss Score
7.89
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGCTCCACGCAGGAGATCGGTGAGGAGCTGATCAACGGAGTCATCTACTCCATCTCCCTGCGCAAGGTGCAGCTGCACCACGGAGGCAACAAGGGGCAGCGCTGGCTCGGG
Seq A exon
TATGAGAATGAGTCGGCCCTGAACCTTTATGAGACTTGCAAGGTGCGGACCGTGAAGGCTGGCACGCTGGAGAAGCTGGTGGAGCACCTGGTGCCAGCCTTCCAGGGCAGCGACCTCTCCTACGTCACCATCTTCCTGTGTACCTATAGAGCCTTCACCACCACCCAACAGGTCCTGGACCTGCTGTTCAAAAG
Seq C2 exon
GTACGGTAGATGTGACGCCCTCACGGCCTCCTCTAGATACGGCTGCATCCTCCCCTATTCCGACGAGGATGGTGGACCCCAGGACCAACTTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271-'3-6,'3-5,4-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(47.5=73.8)
C2:
PF0061815=RasGEF_N=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACGCAGGAGATCGGTG
R:
TTTAAGTTGGTCCTGGGGTCCA
Band lengths:
202-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)