DreEX6050570 @ danRer10
Exon Skipping
Gene
ENSDARG00000042409 | RGL4
Description
ral guanine nucleotide dissociation stimulator-like 4 [Source:HGNC Symbol;Acc:HGNC:31911]
Coordinates
chr8:30954460-30970334:-
Coord C1 exon
chr8:30970068-30970334
Coord A exon
chr8:30954612-30954916
Coord C2 exon
chr8:30954460-30954525
Length
305 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTTATATCTGTAGAGC
3' ss Score
9.03
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
CAGCAGAAGTCTAGATGACAGAACATGGAGATAAAATAATAGATAGTAAACAGAGGTGACAGTCTTTTAGTAATGGTCTATATTATGGGGATACAGTCGGACGCCCTGGGTGTTAAACCCACGTCCCTGGATGAGCTGTTTGAGTCCAGTACATGGAGAATTAAAAACATATGGGATGGGGTGAAGCTGGAGATCGCGGCCGGAGATGGATGTCCGGTGGTCTTAAATAGTTTTACGCATTTGGACCCAGATCTACCTATGTTGGAG
Seq A exon
AGCTCAGTTCAGGAGATTGGAGAGGAGGTGGAGGACGGTGCCATCTATACCATTACACTCCGAAAGGTGCAGCTCCACCAGACGGCCAGTAAGGGCCAGCGATGGCTGGGCGTGGAGACAGACTCTGCCCTCAGTCTGTACGAGACGTGCAAGGGTCGAACCATTAAGGCTGGCACACTGGAGAAACTAGTGGAGTACATGGTCTCCGCCTTCAAAGGGAAAGACTACACTTACGTCACTATTTTCCTCTGCACCTACAGAGCATTTGCCACCACCAAACAAGTGCTAGACCTGCTGCTTAACAG
Seq C2 exon
ATATGCCAAACTGCCAGCCTCAGGCAAGACTAAAGTCTCAGCAGAAGACCACACAGAGCTTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042409-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.087
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(46.2=47.1)
C2:
PF0061815=RasGEF_N=FE(21.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTAGATGACAGAACATGGAGA
R:
GCTCTGTGTGGTCTTCTGCTG
Band lengths:
318-623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]