GgaEX1000683 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4E7]
Coordinates
chr17:6795093-6808240:-
Coord C1 exon
chr17:6807800-6808240
Coord A exon
chr17:6795673-6795783
Coord C2 exon
chr17:6795093-6795286
Length
111 bp
Sequences
Splice sites
3' ss Seq
TATCTTGTTGTCCCGTGCAGAGC
3' ss Score
9.13
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
CTCCCGGCTGAAGCTCAGCCCCCTCCGCCCGCGCCTTCCCCTCGGGGGCCGAGCCGAGCCGGGCCGGGCCAACCCCCGGGGCGGGCGGAGGCTGCGGGGGAGGAAATCCAAGCGCCGCTTTCTGAGCCCGGCCCCTCCGTGCCGTCGGGCTGCTCCGCCGCTGCTCCCTCCGGCAGCCGCTCTCCCATCCCGGTGGCGGTGGCGGTGCGGGTCCCCGGTTATCCCGGGATCCCGGTCCCCCCGGGCCGGCCCGGGGATGCGGTGGCGGTGCCCATGGTGAGCCGCCGGCACCATGCCGCCCCGCCCGCCCCCGACATGTTCGAGGGCTGCCGGCGGGCGCGGAGCCTGTGGGGCGGCGTGAGGCTGGAGGTGGCCGGGGAGAGCAGCCCCGTAGTGCTGCACAGCTTCACCCAGCTCGACCCCGACCTGCCGCCGCTGGAG
Seq A exon
AGCTCCACACAGGAGATTGGAGAAGAGCTGGAGGATGGTGTAATCTACAGCATATCACTGCGCAAAGTGCAGCTCCATCACACAGCCAACAAGGGGCAGCGGTGGCTGGGG
Seq C2 exon
TTTGAGAATGAGTCGGCCTTAAACCTCTATGAGACGTGTAAGGTGCGGACGATAAAAGCTGGGACCTTGGAGAAGCTGGTGGAGTACCTGGTTTCAGCCTTCAAGGGCAACGATTCCACCTATGTCACCATCTTCCTGTGCACTTACCGGGCCTTCGCCACTACCAAGCAAGTGCTGGACCTGCTGCTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412-'2-6,'2-3,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.108 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061815=RasGEF_N=PU(45.3=73.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGTTCGAGGGCTGCC
R:
TGGAATCGTTGCCCTTGAAGG
Band lengths:
247-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]