MmuEX0038654 @ mm10
Exon Skipping
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28533355-28542483:+
Coord C1 exon
chr2:28533355-28533733
Coord A exon
chr2:28540711-28540821
Coord C2 exon
chr2:28542290-28542483
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTTGGGCCTTGTCTTTCCAGAGC
3' ss Score
9.67
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CCACCAGGCCTGCCAACTAGAGGAGGCCCACGCCCCCTCTGAAACCACTCCCCCAGCAGCCCACGCCCCCAGCTGACATCAGCGAGGCCCGGCCTCTGGCGCAGAGCGCAGGCAGCGCGGAGCCGCGCCGGCCCTGCGCCCCGCGCTGCCCCGGGTCTCGCGGCCCGCCGGCCACCCGCGCCACCGTGAGTCGTCCATGGTGCAGCGCATGTGGGCTGAGGCGGCCGGGCCCATAGGGGGCACCGAGCCGTTGTTTCCCGGTTCCCGGCGCAGCCGCAGCGTGTGGGACGCCGTGCGCCTGGAGGTGGGCGTCCCCGACAGCTGCCCAGTGGTGCTGCACAGCTTCACGCAGCTCGACCCTGATCTGCCGCGCCTGGAG
Seq A exon
AGCTCCACGCAGGAGATTGGGGAGGAGCTGATCAACGGGGTCATCTACTCCATCTCCCTGCGCAAGGTCCAGCTACACCAAGGAGCCACTAAGGGCCAGCGCTGGCTAGGG
Seq C2 exon
TGTGAGAACGAGTCGGCTCTGAACCTCTATGAGACCTGCAAGGTGCGCACGGTGAAGGCTGGTACTCTGGAGAAGCTGGTGGAACACCTGGTGCCTGCCTTCCAGGGCAGTGACCTTTCCTACGTCACTGTCTTCCTGTGCACCTACAGAGCCTTCACTACCACCCAGCAGGTGCTAGACCTGCTGTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821-'7-7,'7-4,11-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061815=RasGEF_N=PU(42.5=73.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGTTGTTTCCCGGTTC
R:
GAAAGGTCACTGCCCTGGAAG
Band lengths:
254-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types