RnoEX0073760 @ rn6
Exon Skipping
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7109920-7119459:+
Coord C1 exon
chr3:7109920-7110303
Coord A exon
chr3:7117910-7118020
Coord C2 exon
chr3:7119266-7119459
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCTGGACCTTGTCTTTCCAGAGC
3' ss Score
8.57
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CCACCAGGCCTAACAACTAGAGGAGGCTTACGGCCCTCGGAAACCACGCCCCCATCAGTCAGTCCCCACCCTCAGCTGACATCAGCGAGTCCGGCCCTGGGCGCAGAGCGCAGGCAGCGCGGAGCCGCGCCGGCCGGCCCTGCGCCCACGCCGCCCCGGGTCTCGCGGCCCGCCGGCCACCCGCGCCACCGGGAGTCGTCCATGGTGCAGCGCATGTGGGCCGAGGCGTCCGGGCCCATAGGGGGCGCCGAGCCGTTGTTTCCCGGCTCCCGGCGCAGCCGCAGCGTGTGGGACGCCGTGCGTCTGGAGGTGGGCGTCCCTGACAGCTGTCCAGTGGTGCTGCACAGCTTCACGCAGCTCGACCCCGATCTGCCGCGCCTGGAG
Seq A exon
AGCTCTACGCAGGAGATTGGGGAGGAGCTGATCAACGGGGTCATCTACTCCATCTCCCTGCGCAAGGTTCAGCTACACCCAGGAGCCACCAAGGGCCAGCGCTGGCTAGGG
Seq C2 exon
TGCGAGAATGAGTCAGCTCTGAACCTCTACGAGACTTGCAAGGTGCGCACGGTGAAGGCCGGTACTCTGGAGAAGCTGGTGGAACACCTGGTGCCTGCCTTCCAGGGCAGTGACCTTTCCTACGTCACCGTATTCCTGTGCACCTACAGAGCCTTCACAACCACTCAGCAGGTGCTAGACCTGCTGTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219-'1-2,'1-1,7-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061815=RasGEF_N=PU(47.5=73.8)
Main Skipping Isoform:
ENSRNOT00000084092fB12088
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGACAGCTGTCCAGTG
R:
CACCTGCTGAGTGGTTGTGAA
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]