RnoEX6016149 @ rn6
Exon Skipping
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7117910-7120012:+
Coord C1 exon
chr3:7117910-7118020
Coord A exon
chr3:7119266-7119459
Coord C2 exon
chr3:7119953-7120012
Length
194 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCTTGCTCCCCCAGTGC
3' ss Score
11.03
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGCTCTACGCAGGAGATTGGGGAGGAGCTGATCAACGGGGTCATCTACTCCATCTCCCTGCGCAAGGTTCAGCTACACCCAGGAGCCACCAAGGGCCAGCGCTGGCTAGGG
Seq A exon
TGCGAGAATGAGTCAGCTCTGAACCTCTACGAGACTTGCAAGGTGCGCACGGTGAAGGCCGGTACTCTGGAGAAGCTGGTGGAACACCTGGTGCCTGCCTTCCAGGGCAGTGACCTTTCCTACGTCACCGTATTCCTGTGCACCTACAGAGCCTTCACAACCACTCAGCAGGTGCTAGACCTGCTGTTCAAAAG
Seq C2 exon
ATATGGCTGCATCCTTCCCTACTCCAGTGAGGACGGCGGACCACAGGACCAACTCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219-'7-8,'7-2,8-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(47.5=73.8)
C2:
PF0061815=RasGEF_N=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTACGCAGGAGATTGGG
R:
TTTTGAGTTGGTCCTGTGGTCC
Band lengths:
170-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]