BtaEX6047038 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004194 | RALGDS
Description
Bos taurus ral guanine nucleotide dissociation stimulator (RALGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_001101978]
Coordinates
chr11:103137213-103139619:-
Coord C1 exon
chr11:103139494-103139619
Coord A exon
chr11:103138067-103138260
Coord C2 exon
chr11:103137213-103137272
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTGTCTCTCCGCAGTAT
3' ss Score
11.79
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCACTGTCTTTGCAGAGCTCCACGCAGGAGATCGGCGAGGAGCTGGTCAACGGGGTCATCTACTCCATTTCCCTGCGCAAGATCCAGGTGCACCACGGCGCCAGCAAGGGCCAGCGCTGGCTCGGG
Seq A exon
TATGAAAACGAGTCGGCCCTGAACCTGTACGAGACCTGCAAGGTGCGGACTGTGAAGGCGGGCACGCTGGAGAAGCTGGTGGAGCACCTGGTGCCCGCCTTCCAGGGCAGCGACCTCTCCTACGTCACCATCTTCCTGTGCACCTACCGAGCCTTCACCACCACCCAGCAGGTCCTGGACCTGCTGTTCAAGAG
Seq C2 exon
ATATGGGTGCATCCTTCCCTACTCCAGCGAGGACGGCGGACCCCAGGACCAACTCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004194-'0-4,'0-0,1-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(47.5=73.8)
C2:
PF0061815=RasGEF_N=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGTCTTTGCAGAGCTCC
R:
TTTTTGAGTTGGTCCTGGGGT
Band lengths:
186-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]