RnoINT0003557 @ rn6
Intron Retention
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3837150-3838911:+
Coord C1 exon
chr18:3837150-3837289
Coord A exon
chr18:3837290-3838795
Coord C2 exon
chr18:3838796-3838911
Length
1506 bp
Sequences
Splice sites
5' ss Seq
TTGGTACAT
5' ss Score
1.81
3' ss Seq
GGTGGATGGCTTTGTTTTAGGTC
3' ss Score
6.29
Exon sequences
Seq C1 exon
GTTCCTTCCGTGCCTCCTTTTGTCCCCACTTACTTGGCTGCCAGGACCAAGTGATCTCTGAGGGCCAGGTGGAGTTTGACATCTCAGAAGCAGATGTAGCTGTGACTGTGAAGATTCCAGATGGAAAGTCCTTGACATTG
Seq A exon
GTACATTCAACTTAGCCTTCAGTTTGCTCCTTGGTCAGCCATTGCGAGTTAGGCTCCTGGCAATACTTTCTCCAAGGAATTAACTTTACTTATGGAAAAGTTGATTTGCGAGAAAGTAAGTGTGTGCGCTTTACAAACCCATAAAGATGAAACTGTAGGACAGTCTAAGCCAGGAGGATAGGAACAATAATGTAAACACACACCCATCCCCCTCCCCCGCTTATTCCTTGCCCCTACTAATCCCTCTCTGAAGCTTTTACTGTCCTCACTGCTTCCTCTCACTTTCTCCTGTGTCCCATTAGTGATTTTCCTTTTTTTAAAAATTTTTTAAAAATATTTTATTTATTATATATAAGTACACTATAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATTTCATTACAGATGTTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCGGGAAGAGCAGTTGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCATTAGTGATTTTCCTTAACCCAGTGTTGTTTTGAGCTGTGCCCCAGGTTCCACTCTGAGACCCCTGTGTCATTTATCCATGGAACTATCCATGCCCAGTTCTCTGATCTGTGGGAACAGTAGCCATGTTCCTGAATTCACCCTGGATCTTGCCTGAAGTCCAGGCAGCATCTGACCACCAGGAGCCCCCTCATACTCTGTCTGACCTGCTTCCGGGGCCTCTCATGCTGTTCGTTTTATTGAACCTGCTTCACTATGGTCCAGGTGCCTTGCTGTTTTCCCTGCCTCTCCCTGGTCCATCCACCTCATTCTGGTTTATGTGCCAGGTAATGTATAGAAGGAAGGGTTTATTTGGGCTTCTGGTTTCCACAGGATAAGTACCCATCCTGGAGAGAGGCACAGTGACAGGCAGCAGGCATGGTGGCTGGAGCCAAAAGCTTATATTGTGAACCATAATCAGGAAACAGGAAATGGAGTAGGGGAGTGTGCACATAAGCTGGTTTCTCAAAGCCAACCTCCAGTGATACAAATTCTCCCACAAGGTCACACCTCCTCATCTTTCCTAAATAGTGCTACACATGTTCAAATACACGAGCTATACAGGTCATTCTCATTAAACCCGGCTGGGTCTGCAACTTCTATTTGCTTACATTTAAAAATACAAAGCAATGATCTCTGAAGAATGAGAGAGACCCAGCCACCCCTAACAGGCCCTGGTCAAGATGCCTTGAACCAACTGCTGCTTGACACTGCGATTCCTTATCCTAGGAGCAGGTGCTCCAAGAGCCAACTGTGTTCCGTGTTTCCTAGCGACATGATGCTAGTTCAGCCTTTACCCCGCTCCTTTAGCCTGCCTTGGGTTTGCTGCTGCACTTCCTGCATAAGTCCCATCTTGCTGGCATTCGAATAAACAGGAAAGGATGTGGTTCTCTCCTCCTTCACTGGCTAGTCACAGGCATGCCTGCGGTAAATCTAAATACAGGTGGATGGCTTTGTTTTAG
Seq C2 exon
GTCCGGGTTCTGGTGGTACCTGCAGAGGATTACGACTACCACATACTTCACAGAACATCAGTGGACAAGTCCTCCGAGTTCATCAGCAGTTGTGGAGGGGACAGTTTTTATATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300:ENSRNOT00000092846:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTTCCGTGCCTCCTTTT
R:
TCAATATAAAAACTGTCCCCTCCACA
Band lengths:
256-1762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]