RnoINT0004118 @ rn6
Intron Retention
Gene
ENSRNOG00000058398 | AABR07035780.3
Description
NA
Coordinates
chr12:22356942-22357915:+
Coord C1 exon
chr12:22356942-22357297
Coord A exon
chr12:22357298-22357697
Coord C2 exon
chr12:22357698-22357915
Length
400 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGG
5' ss Score
5.2
3' ss Seq
CATTCTTTTTACCCCCATAGCTC
3' ss Score
8.94
Exon sequences
Seq C1 exon
CCCCAGATCCCCAGTGGAAGAGTCTAGGCAGGTGCTACTGTGGACCTCTGCACACAGCAACAGAAGCAGTCTTTCCTTAAACACTTCCGACACAGATAGGTAGTCCTGATTGCTCTGAATAGATAGCAGACCTAAGTCCATGAAACAGGATGTGATGCACTTTCTAACCAGTCCCCCCATCGTGACGTTCTACCTCTTCCCATGGTTCCTGCAGGCAGGCAACACTTGGACCTCCAAGGGCTGTACCCAGAGCTGTACCTGCATAGAAGGGGCCATCCAGTGCCAGAATTCCCAGTGTCCCCCTGGGACTTACTGCAAGGACAGCAGTGATGGCAGCGGTTCCTGTGTCGAAATCA
Seq A exon
GTAAGGGGGCCGTGGGGGCGGGCAGAGGTGGTGTGTGTGCTCATGGCTGGGTGAACTGGAGGCAGAGCAAAAAGGGGCTCGGTTCTTTGCCCTAAGAGGTCAAGGTCCTGAGGTCCCTCAGGAGAGGGGGGGTTCTGGTAATCCATAGCTCTGCCGAGACCCTTCTCTGGATTAGTCTCTCAATACTATCTGACAATGACGTGGGTCGTCCATTCTAAGTTTCTTCTCTAAGGGCTTGGCACATAGGCCAAGCCCAATAAATGTTCACTGAATGAATAACAAAAAAATGGGAGAACCCCAAGACCTCTTGGTCATTCTGCCCAGCCTGGTTTCTGCAACCTCTGCTTTTTCAGGCCCCTTGTGGACCTCTCCACTAACCCCATTCTTTTTACCCCCATAG
Seq C2 exon
CTCTGCAGTGCCCCGCCCACAGCCTGTTCACTGACTGCCTTCCCTCCTGTCTGCCTTCCTGCTTGCACCCGGATGGCCTCTGTAAAGGAGTCAGTCCCACAGTCCCTTCCACTTGCAAGGAGGGCTGCGTCTGTCAATCTGGCTATGTGCTGAGTAATAACAAGTGTATACTCAGAAATCAGTGTGGCTGCAAAGACGCCCACGGCGTTCTCATCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058398:ENSRNOT00000084705:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGTGGACCTCTGCACACA
R:
CAGTCAGTGAACAGGCTGTGG
Band lengths:
358-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]