RnoINT0004133 @ rn6
Intron Retention
Gene
ENSRNOG00000057201 | AABR07035782.1
Description
NA
Coordinates
chr12:22385095-22385527:+
Coord C1 exon
chr12:22385095-22385294
Coord A exon
chr12:22385295-22385388
Coord C2 exon
chr12:22385389-22385527
Length
94 bp
Sequences
Splice sites
5' ss Seq
AAGGTCCGG
5' ss Score
3.7
3' ss Seq
CTTCACCTCCTCTCTTCCAGCTG
3' ss Score
10.27
Exon sequences
Seq C1 exon
CCATGACGTGTCCTGCCAATACTGTGTATCAGAGCTGCATGACACCCTGCCCAGCAACCTGTGCCAAATTTGTGACCCCCAAGGTCTGTGAAGGCCCCTGCGTGGAAGGCTGTGCCAGTCTCCCAGGCTACATCTACAGTGACACACAGAGCCTCCCAGTGACGCACTGTGGCTGCACCACCAATGGCATCTATTACAAG
Seq A exon
GTCCGGATGGCAGAGAAGCCTGGGAGCCCAGGTGCAGAGAATGGGATGCCGGATGAGTCTAGACCGTCTCCTGTCTTCACCTCCTCTCTTCCAG
Seq C2 exon
CTGGGTGACAGCTTCGTAACTAACAACTGCTCCCAGCGCTGCTCCTGTGCAAGCCGAGGGATCCTGCTGTGCGAGCCCTATGGCTGCAGAGGTGGAGAGTCCTGCATGGTGGCCAACTTTACTCGAGACTGCTTCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057201:ENSRNOT00000087948:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAATTTGTGACCCCCAA
R:
CGCTGGGAGCAGTTGTTAGTT
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]