RnoINT0005674 @ rn6
Intron Retention
Gene
ENSRNOG00000030243 | AABR07051892.1
Description
NA
Coordinates
chr3:26049587-26056818:-
Coord C1 exon
chr3:26056704-26056818
Coord A exon
chr3:26049704-26056703
Coord C2 exon
chr3:26049587-26049703
Length
7000 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ATATAAATTGATCTTCGCAGCCA
3' ss Score
5.07
Exon sequences
Seq C1 exon
TGCCCGGAGGATCAGTTTAAATGCCAGAATAATCGTTGTATCCCCAAGAGATGGCTTTGTGATGGAGCAAATGATTGTGGGAGCAATGAAGATGAGTCTAACCAAACCTGCACAG
Seq A exon
GTAAAGGTCTACACATATGTGATAAATCACCTCCACATGTGTGGCATCGACAATCTGATTACTGCCATGGTCACTGAATTCAGTGTTCGGTGTCACAAAGGACAGATTGTAAATGTTTTACTAATCCTTGAACATGATTCTGTTTTTCAAATTAATTTGGCACTTCATCTGTCCACGTGGGCTGCATGTTGATCAACATCTCCATGTTCATGCTATACTGTCCTAGGCAGCAGAAGATATTCATTAGCATGCTGTGGTCCTGGCCACCTCACCAGGAGAAGTATTTATTTTATCCTGAGAAAATACTTAAATTTTTTTTATATTTTTCTGCTACAGAATACCTTTGTGAATAATTTTCTCTTCATGGAACATTATTTATGGGAGGCAGGGTTTTTTTCTCTGCATGAAGTCCCAACGCTACTAGGCATATTTATATTTCCATATAATCCATGCCTTTGTAATCAATCATTGATTCCCTAGCCAGCTTCTCATTGAATATAAATATACAGCTGGTGGTACAGCTTACAAAAGAGTTCCAGAAAGGTCATGATTACTAGGTAAATGTTGACAAATGAATGTGGCTAGCAGCAGCCCAGTACTCTGCAAATGATGAGCAAAAGCTAGTGTGTGGCGATACATGTTGCTATAATTGGTGAAAACTGATTGTTGGATGATGGTGCAATATTAAAGCACACAATCCACACTATATCTCTTTATCTTTGAGCCGTTATATGCCTTACTAAATAAATACAAACTAGACAAAGCAGACTGTATACAGAGAAATTTGTTCCTACTTGCTTTTTGGCATTGAATTTTCTGTGCAAAAGCTTGTCCCCTGTGTCTTACCTTTTGAATACATTCCTTTTAGCTGTTAGTATCTAACAATCTCTGTTAGACACTGGGATAACTAAAAATGGTTTTCCAAAGATTTTCTCGCTTTGTACAAACGAGTAATTGTAAATGTAAAAGTAATAACATTTTCTACCATGAATCGACATTATATGAACAGACTTTTCTATGGTGAAGCATTTGCTGACCATCTGTGGACCATCAATTTTCTTGAGTCTTGATTGAACCTTCTATAAACTTTAGGGGGAGTGAATTTTTTAAATCCTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAAAACAAAAGACCTTGAGAGTTACTTTCAAGATCTTTCATTTTGTAGGTGAAATCTAGCAGAGATTGCCTAAACCTTTGGACTGAACTGTAGTATACACCAGATTATCTTCGATTTTATGTGCATCCAACTTGACTTTGGGAAGGTTACACTGAGTATGACTCTAATTTGCAATGAAGCATTTCTGCACACCAATGCACATACTAAGCTCTTAAGATTAAGGTTTAATTCAAAAATTGTGCTTCATTACAGCCTGATCATAAACAGGGAGAGACTTTTGCCATAAAATAGAGAGACACATTTTATAGTATCACACCTTACTTGTTTATATTAATTACTAATTTGGCTTGTTTCCACATGATTTATATAAGAACATTTGCATTCAGTTAACTAATAGTTGGGGCAGAATGAAAATACTACTATGTAAGAGCAAACAAAGCAATCAATCCTGATTAGTGTTATTTCGAGAGTCCTGGATTCCTATGGTCCATTATGAAATAAAACACAGCATGTTGAATGCCATTTCACATTGTGCCCCTAACTAACAGGTCATTACAATCATGTCAGTATATTTTAGGCAGCTGGTATCTCTGAAAGGGACCTTGAAACTCAAAAAATAAAGAGAAAAAGAAATGTCTCTTTTATGTTTACAATGTCTGAAATTATGGTTAATATATGATATATTTCCATTTTATCATACTCCGGTAACTAACAATTCATATGACCTGCCACACCTGGGCAAGGGGCACATCCCTCCTGGCATGTGAAATCCAATTGCATATGCAAAGATCTATTTTGGATGAAAAGGCTCAAATCAGGGATATTCTTATCATAAAATGTTTTCTTCATCAGTTTAAATTGGGGTGGTTTGTATATGAATGGGAGTCTTCTGTCTACAGATCCATTTCCTAATCTGTTCATTTAGGACTTTCCCCAATATGAATCAGTACATATTTATCATGGCATTGATAATAGAATGATCGAAAGTATGTAGTACTTTCACTTGTAGACAGAGAGCAAGGACAAACAAAAAGACACATCCGCAGCCAGCCATTGTCATGCAGGATGCAAAGTCCAAAGTTGAACCACACCGCGTTTATTCTGTCCATTTTTTTGCTGACTGGACATATGCAATGTTGGAAGCAAGAACCTCATTTGATAAAATGCCTGCACTAAATTGTCCTGTGGGCAAGCAAACCTGTTTTGCATGCTCTTGGATGGTGACAGATATGGCAGAGCCTAGTTCACTGTGTGTGATGATACCTCTTGCCATATGATCCTGACCAGTTATAAAAAATAACTTAAGACATGGAAAGCAAGCTATTAGGCAGAGTTCTGTATTAACTGTTGCCTCTTCTTCAGTTATGTGCTCCAGATTTATGCCTATGTTCCTAATTCTTATTTCTGTAAGCGATGGAATATGTACTGAGAGCAATATGAAATATATGCTTTCCTCATCAATTGGCTTTAGGTCATGGTGTTTCCTCGCAGCCATCGAAAGCCAAGGGTCATAAGAAAGTATTTGGGCAGAACTCTTGAAAGAGACACTGTTAAACCCGTGCAAACATAGAAGAAAAATCCATAAGTAATAATAAAATTATTTTACAAAGGAAGTAAATAATCTGAATAAAAAGAAGTTTTGTCGATATTATAGGGGGAAGGAGATGGTACATGTTATTATTGGATGCATAAATTGAATTTTTATACTAGAAAATAGTTTAAGTTTCAAAATGTATGCATGTTTAATTCTGAAACATGTACTTTCCCAGAACAGTTAATATCCAGGCATAGAAAAATCTGAGATGTTCTTTATGTGAGAACTAGAATTAAAATACTCCCTAACCAACACAATTTTAAATGGGTAGAATACCAGATTGATTTGTATATTGTCATGTTTAGTAGCAATGGGTGATCTCATACTCAAATGTCAAAAAGAATGAGGAGTTTTCAAAATATCTTAAGTAACAATTTAAAAATACAAACATTCTTGTTTGCAGGACATATGAACTATAAATTCTTTATGTCACTTATAAATTCATGTATAGTATTTAAAAATATTCCCAGAGATGAAAACAAAATAGTCTGGTCCGTGCAAGAGAGATCAATGTGTGGGAAATACTCCATGGTCCTTAAGATGAAGCTACAGCACACGTTTCTTAAACAAAACAAAGCAAAATTCTGTGGCGAATGGAGAGAAAAAAAATTAGTTGTGGCTGTAAGATATCAACATGTGTCTACATTAGTTGGTAGACCTCAATTTGTGATAGAAACAGTTCACTAAGACCAAATTACCAACTGTTACCTTATTGGGTTGGGGCAAATGTGGCCTAAATACTAGGAACAAGTTACAGGCAGAACCTAGAAAGGTGGTAGCACATGCATGGGTCAAAAAAGGAGCAGACATAGCTGCACAGACCAGCCGTTGTTCCTCAAAATTTTAATTCCCATTATTCAATTCTAAGAGGTTTTCAGAGGCCTAAATGGGTAGTAGTTAGATTTGAAATTCACTTTCCTCAAGGTAATATTAATAATTCTTACACTTGCACCTAGGCAATCTAAAGCCAACATTTTCTCCCATCAGTGAACTATAATTATATTGTACAATATTCTTGTCCTCACATCATCCAACAAGTCTGATTAAACATGTTCTAGGAAATGTGAAGGTATAATTACATTAAAATAATCAATATAATAAAATTAGACCTTTCACAACATAAACTAAAAAAAGTTACTCCCCCCTCTTCTCTTATAGTGCTGGAAATAATAGCTAAGGTCTTGGACAAGGTGTCCAAATGCTGTACCCTGAGGTACATGCCCAGCCCTTGGTTTTTTGAATTAGGCTTTTATAATGTAGACCGGGCTACTCTTAAAAGCATCAGCTTTCTTCTTCCTCCATGCAACTTCTGGGATTACAGGCATAAGCCAGTATGTGTTGTCTAAACAGAATGCTTTGGTTCAAGCAGCAAAGGGGACGTTTCTGACTGCTTTGCTTGAAGAGGCTTCTCCTACAGTGCTTACACTCTGTGGTTCCACTCAGCGACACGGCAACAACAATGAGCAGGAACACTCATACTGTGAAAGTGAAATTTCAATTCAACTGCCAGATAAACAATTTTGAAAAAGGCACTAACTTCCTCTTTAGGGTACCATTTGCCATAAAATTAGAGTCCTTCAGGGCCGCTAGTCTAACATCACCAACAAACTAATTACATCTGATGCAGCAGAGGCCTAAAAAAAGAAAACACTGTGTTGTCTCTTAGTGAGTCCATTGATTTGAAAGTGCTTATTCTGTCAATCTGGTTATGTCTGGAAGGCTAAACTTAGAGAATTAAGGGATAAAATATCTTTCTCATCTGAAATCATTTAAATTTCTCAGGCAGAGGAAGAAAATTGTTTTTCTCCATGATTAGAAGAGATAGAGAATTCCAGCACTTTCTAGTCATAGTATCTTCAATAGCTATATAGCAAATTCTTGAGTCAGGGACTACAGCCATTCCTGCAGTTTCGTCGTGATAAAGGGCACACACACACTTCCCCTTGCCGTCACAATGGTAAATCGTATACTGTTCGAATTAGTCTGAGAAGTTCTTTTTCTTATCTCTCTAATAAGAGCAACTCGTCCAAGAAATCTTTGCTAGAATCAAGAGACTGATAGGAAAGACTGTATTAACAAGAACCTAAGGTTAAATAGCAGTACATTACATAAATTAAATATATTATGATTATACAAGGTTGGAATTAAATGACTATAAATTATCTGATGATATTTTCCTTTAAAATTAATAAAGAATATAAAAAATAGGTAGGAAGAAGGAGGAAGGGAGTCACCAAGAATAGGAGGAGAAAAAGGGAAGAACGCTAAAGACAGAAAGAAAAAAAGGAGGGAAAAGGTTAGGGAGAAAGAGAGAACAGTGGAAAACAAGAGTCCTTCTAAATTTCTCTTAAAACGCAAAAGGTGAAAATAATTGCCTATAACCACAGAAGCACTACAGACATTTAAAAGGGGGAATTGTTTATCTCCTTCACATAGCCTAAAGTTTTCTTCATCCAATAGCCTAAAAGCCCACACCTGGGATGTATGCTTCTGCATTGTTTGCAATGTTTCATAAAAATTACACATTATACAAAATTAGCTAAGACCTTCATTGAGTTACATTATATAAAATTAGCTAAGACCTTCATTGGGTTTATTTTGCATCTCAGGATAATTGGAAAGATAATTGGTAAAATCAATTAAAGTTGCAATTAGAAATATTTCATGGTTTTTAAAATAAACAATCAAAATTTCACAACTTTATACATTTATTAGAATATGTAAAATGTGTTAATTCAACACAAGTAATCAGTTTCTAAAATGGAAATAGATATTATATAAAATATTTAACACATTATCTGTATAGCAAAATACATACTATAATAACATTGCAAATTACTCTAATTCTAGATACTATGAATATAGAATATGTACCTCCAGTTCATACTGGTCACAACTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTCTGTCTACTTTTATAAAGATATTATTTCAAATAACTTCTATGTAGATTAACATTAGCCTTCAAGTTAAATTATTTCAAGCAAACTTGTTTTTTCCACGTAGAGATGATAAAATTTGTTACCGTGTAAGGCTCTTCTGTCTTGTGTGGAAGTTCAGAACCTAAGCAGTCTCTCACTGTCTTCAAGCATCAACAACATACCCCACCTTTCGCCCTTTCCAAATAGAAAGATACGCAGAGTGGGATAATTTTATTTCATACAAATTTCTGTTTCCAAGAGAAAGATGAAAAATGCACATTCAAAGTAACCAGTAGGCACCAGGCACAGGCCTGCGGTCTGGAGAAGAGCAACAAATGAAACCATTCATGCTCTTCACTGTTGATCTGGACAATAGAAAAGGTCAAAGTGCAGCCTGTGGGATCCCATTGCTTCAACCTACTGCTTCTCACTAGCACAAACGGTTTTACATATTGGTGTTCCTGGCAGCCCTCAGGAGAGCCCAAAGCAAAGTTTTGAGCATAGCGATCAAAGAAGTTGTGCATCATTTTATACAGCTGCACGAGGAATCCTTATAAAGTCCTAGGCCAAATGTATGTCTTAGAAAATATTTCTGCATTCTCTCTTCACATAGAGAATTCACTAGCAATGCAGGATTAATACACAGGAACTATTAGATGAGAGGAGCAATTCTGACCCAACATTAGAACCTAGGTATCTTGAGATTTGCTCACAGGCCTCTCTTCGCGTTGCAGGACAACAGTTTCTTAATTTGGTAGCAAATGATAGTTTTTTAAAAGTACCAAGTTGGATGAAATTTAATTCAATAAAAATTTATTGGTCATTTTTAAAAATAATAACTTTTCTTCATTCACAGAAGTTTGCAAGAAATATTAATTTTAGTGGCCATTTTCAATGAAAGATAACACGGGTATACTTCAGAGCAGAGAAGTAGGTAATGTTACAGAGCCTTAACTAAAAATTCACTTTAAAAAATTGTATAATTAAAAAAGAAGTCATGACTTTGAAGGAGAGCAAGACGGAGTAAATGTGAGAGTTTGGAGGATGGGATGGGGAGGGAGCGATATAATTAAATTAAAATATCAAAACTTTATAATGAGCTAACATAAACATAACATTTATTATAAAACTTATATTGCATGTGACATTACTCAGAGAGTCTGCGAATTGATTCTTTGCATATAAATTGATCTTCGCAG
Seq C2 exon
CCAGAACTTGTCAAGCTGACCAATTTTCTTGTGGAAATGGGCGCTGCATTCCTACAGCATGGGTATGTGACCGAGAGGATGACTGTGGTGACCAGACAGATGAAGTGACATCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030243:ENSRNOT00000044209:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=94.9)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]