RnoINT0006412 @ rn6
Intron Retention
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:86700380-86702494:-
Coord C1 exon
chr7:86702321-86702494
Coord A exon
chr7:86700454-86702320
Coord C2 exon
chr7:86700380-86700453
Length
1867 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATA
5' ss Score
6.84
3' ss Seq
TTTTTAATTGTTTACTTTAGAAC
3' ss Score
8.76
Exon sequences
Seq C1 exon
CAAAGTTCTGTGGTGATCCAGGTATACCTTCCCAAGGAAAACGAGAAGGCAAAAGCTTTATTTACCAGTCTGAGGTTTCATTCAGCTGCAATTCTCCCTTCATACTAGTAGGATCAAGCACAAGATTATGCCAAACTGATGGCACTTGGAGTGGATCATCACCTCACTGCATAG
Seq A exon
GTAATATACAGGCTGGTTATGCTCTGTAATTGCACAAAAATATCTGGCAGGAACATTTAATTCTTGTATCATGTAAAATGTATAGTAAACAAACCATATAGGTGGTTACACATATATAAAAGTATAGAACATTTTAGAAAGTACTGAGAAAAAATACAGGTAGACCAGGTCATCGCTTTTAATCATTTTAAACTTCCAGAAGAAATACTGAAATGATCTCATCATTGATCAGTTTAATGAAAAAGAAAGGCATGTCAGAGCAGAGTATTATTAAGTAATATTATTTTAAAGTATTTTAGTTAATAAAACACATTCATATGAAATGAATATTGCTCAAAAACATAGAGATATTTGAAGGGCTATCCATGTATATCACTGATTTAACACTGAATATTACCGTTTAGAAATTCACCTAGTAACCTCCATGCAAACAGTCCACTCACAAATGACAAGCCTACCATTTCCAGGCAGAAATGAACTACAAGTATCAGGACACTCCAAATTATCAATTATTTTCCATGAATTGCTCTTCCTTTTTCACAAGAAGTTAGCCCTATCTTATATCTCAAGCAAACATTTTATACACATGGGTTTCTCGAATGGACAGTATTGTCTTTAACTTCTCATTTACAAAGTGGGTTTGATTGATATCAAGTACTTTTTTTCTGACAAAAGTTTCAAAGTTCAAGAAGCACATAATGCATATAAATGAAGTCAAGTTGAATTTCTTCTTTTGAAGATGTATTTTTAAAAATATGCATGTGTGGGTGTCTGTATGTGGCTCTGTCTGAATGCAGAGCTAGCAGAGGTCACAGGTGTCTGATATTCTAAGAGCTGGAGTTCCAGGCTGTGATGAGAGTCTGGATATTTATGGTAGCCCCGGAATCAGGTCCTATATAAGCTAATTTAGCCTCTTAGTCACTGAGCTGTCTCTGTAGCTTCAACCTGAAATTCTTGCTTCAAGATTAGGAAGCTTCTGCTTACTGGGAGGCACTTAGTATTACGTTCAATATTCTTGCCAAGGGTACATTTGCTAAGACCAAGATTATTTAAGATTGACTTGCGTTAGTGAAGTATACTTGGTTACACAAAATTTCTTTTTTTTTTGAGAGAGAGCTTTGTATCTTTCTATTAATTACTCCCCCATTGCTGTGATCAAACACAATGTTCAAGGCAAATTATAGAAAAAAAGAAGCCTACTTGGAATTAGAGTTGGGAAGGGATAAGGGTGCCTCTTGGGGGGAGGGGCAGAAGGGTCTAAGTCAACCAATGGCATGGATATTCTGTAGAGCCGAAGTTCCGGTCTTGAACTCCAAGCAGAAAGCAGAGAGGGTGAACATGAAGGGGTTTGAATCTTTAAACTTGCAGGGTATACCTCCAGTGACATACCTCCTCTACCAAGGCCACCTTTTCCAAGTATCTCTACCATTACCACGAACTCTGAACCAATAGTTAAATCCATAAGATTGTGAAAGGCATTGTCATTCAAAATGCTACAGTGTATTTTGAGCATATTCACCTCCACAACTCTTTCTAGATACACCACCTCTTCCTTACCCATACAATTTTATGCCTTTTTTAAAATGACCCATGGTGATCAATTTGTACTGCGCCAATTTTCTTGGAAGTGTGGTTTCAGGGAAGCTTGACTGATATGCCAGTTGCTAGTCTCCTAGAGAAAATTATAACTCAGTCTGTAAGCAGATGACTGCCAGTAGCTATATTGCTAAGGTTGGGATTGTGTCCCCAGTGTCCATGTCCATGGTTGGACTTTTTGTTTGACTGGCACTTGTGCAAGTTTTATGCATTTGATGTCAACTATTGTGAGATCGCCAAAGAGTGTAATCTTTTTAATTGTTTACTTTAG
Seq C2 exon
AACCTACTAGAACATCCTGTGAAAACCCTGGGGTACCAAGGCATGGATCTCAAAACAATACATTTGGATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937:ENSRNOT00000093026:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGTTCTGTGGTGATCCAGGT
R:
AATGTATTGTTTTGAGATCCATGCCT
Band lengths:
238-2105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]