RnoINT0008457 @ rn6
Intron Retention
Gene
ENSRNOG00000062252 | AABR07072853.4
Description
NA
Coordinates
chr3:10391947-10392302:-
Coord C1 exon
chr3:10392165-10392302
Coord A exon
chr3:10392069-10392164
Coord C2 exon
chr3:10391947-10392068
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CGGGTGGGGATGGCTTGCAGGGG
3' ss Score
2.72
Exon sequences
Seq C1 exon
GGCCTCTGATGCGGGTGCTGGTGGTCACTATTTCTCCCATCTACTGGGCCCTGGCTAGAGAGAGCGGAGAGGCCTTAAACGGTTACTCCCTGACCGGCGGCAACTTCCAGCAGGAGTCACAAATGGAGTTTTCTACAG
Seq A exon
GTGAGCCTGGTCTTCTTGCAGAAGGCTAGGGGCGGGGCCTAAGAGAGCCTGGACTGCCCCTGTGCTGACTCCAGGCCGGGTGGGGATGGCTTGCAG
Seq C2 exon
GGGAGCTGCTCACAATGACCCAGGTGGCTCGGGGACTGGATCCTGATGGGTTCCTTCTTGTGAACATGAAAATCAGTGGCATGATCCCAGAGAGCCTGGCCGACGCAGATCTACACGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062252:ENSRNOT00000093281:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGCGGAGAGGCCTTAA
R:
TCTCTGGGATCATGCCACTGA
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]