RnoINT0010006 @ rn6
Intron Retention
Gene
ENSRNOG00000015248 | Abca12
Description
ATP binding cassette subfamily A member 12 [Source:RGD Symbol;Acc:1304586]
Coordinates
chr9:78617834-78621058:-
Coord C1 exon
chr9:78620873-78621058
Coord A exon
chr9:78618013-78620872
Coord C2 exon
chr9:78617834-78618012
Length
2860 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTGTGGTTTGGCTTTTGAAGATG
3' ss Score
6.26
Exon sequences
Seq C1 exon
CTCTTGAAGCAAAATTCAACTCCAGAAGACATACGAAGAGAGCTGTGCGAGAGTTACCCTGGGTACACTGCGGACTACGCCTTCTCTTGGGTCACTCTAGGAAAAAATGTTTTCAACAAATTTTGCCTTTCAAACATGACACTTTTAGAGTCTTCTCTCCAGGAACTAAAATATCAGGTCTCTCAG
Seq A exon
GTGAGTGCATTATATATATATAATATACATATATATATATATAATATATATAATATATATAAAATACATGTATAATATATATTATACATATACATATTTGTATATTATATATACATATATTATTTGTATATTATATATACAAATATGTATATGTATAAATACATATTCCTTTGGATCTTCAAACTGACTCACTATGAATTACTAAACATTTCTGTAGTCCATTTGGACTGGGAAATATTGACTAGAATATCTGAGAACTTCAGCATAATTTCTTCCCACATAAACATTTGCACCCGGGATTTGATGTTAAGTACCAGATATTTATCATTAAAATGTGCAGGACTGAAATGATTTGATGTTGATTTGAAATATTTCATATGGTTAATGTACATGTTCCTCAGATGAAATACAGCTTGGCTCCATGTTGAATAATGAGTGTGCTCCCTGAGACCCGGGAGTGTGGTTCCATAGGACAGAATGCAAGTTTAATAATTCAACTATGAGAGTCATATTCTTGTCAGAAGTTAGAAAAATGGGTGATGTCTTTTTATTTTTCTCACGACATCAAATTTCATCTGGCGACTTTTGATGGAATCATTTATCCCTGTTCCTCAATTTTACATGCTGAAGCCAATCCTGTTCAGTGAAATCTGTGTATGCTAGTCTTAAGTTGTGATAGCAAAATCAAGACACCGATAGGCTAAACTTAATGACATCTATAGGCAACATTCTTCACAAATTTTATAGACAGGAATAAATAAAGAATGCATACTTTAACATTTACCCTTGAGTCTCTAATTATACTGAAAGTAACTTTTAATTTTTTAAAAAATCTATCTTTTAGTAATCTGGTTTCCAAAAGAGCCAGGTTAAAGACACTATTGTATTAGTTCAAATATTATATGAAACTCTCCCATCCTTGAATTGTAAGAGGGATGGTATCTTAGGCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCGAGTTGGGGAGGAGGTTTATTCAGCTTACACATTCACATTGCTGTTCATCACCAAAGGAAGTCAGGGCTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGATACTCACTGGCTTGCTTCCCCTGGCTTGCTCTCTTATAGACCCCAAGACTACCAGCCCAGGGACAGCACTGCCCACAATGGGCTGGGTCCTCCCCCACCTTGGTCACCAGTTGAGAAAATGCCTTACAGCTGGGTCTCATGGAGGCATTTCCTCAACTGAGGCTCCTTTCTCTGTGGTAACTCCAGCTAGTGTTGAGTTGACACACAGAACCAGCCAGTACAGATGGAGGTGTAGCTCAGGAAGAGAATGTTTGTCCACAATCCCAGTATCAGAAAACAAAAGCAGAAAACAAACAAGTAAACCAAAACCTTCCACCCTTAAATTCTTCATCAAATAGAGTAGCCTTAGTGGCCAAAATTATTCTGTTCAAAACCAATCAAACTAAGACAGATGGAAACTTCCTCCTGACTGCTGTGAGTGGGGTGATGGAGAGAATTGCTTTCGCTGAGAACATAATGAAGAAATACTTCTGAAGACACTATCTGGATCATGTGATCCAAAAGCCATAGTTTCCCTGGCTTATTGATACAGTACAGTTATTGATAGTGTGGTGATCAGGTTAGGGGTTCATTATAATTAATGTCCATAGCTTTGCAACAGAATCTGAAAACACTTTATTCTATTGTGTATAGCTCTGATAGTAAGCACTTTGGTAAATATATTTCTACATGAGTATATCTATAAAATATTTCTGGCATTTTCACACGCATTAGTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACAAGTAGTCCTCTGTCAGATGCAGGGTTGGTCAAGACCTTTTGCCATTCTGTAGACTGCCATTTGTCCTGTTGATGACACACGCATTAGTTTTAATGGATCTCTACCAAAAATAGATAATTTAGTAAAAGATATGGGAATAATATGCCTACAGCTCCCCAGAAATGTTATAAGGAACCCCCCCCCCCACTCAGGGTCCTGTGGACACAAAAGAGAATCTGCACATTTGACTTCACAGTGATTGTGGATCATGCATAAGACCTGTACAAGCTCAAGCTAGACCAAATCCCAGCATGGAGAGGAGAGGTGGGCATGAGTCTTAGTGATAGTCAAGGAGGTATTGACAATTGAGGTGCCAGGAGAGGGAGAGTCAGTTTTCTTCGAGTATCGCTCCCGATAAGGTGACCACACTCCAGTGGGAAACTGCTCATCTGAGAATATATAAGCAATAGTTGGACTTGATGGGCAAGAAAAAAGAAAGTACAACACAAAGTTGGGTAGGTAGGGAAGGCGTAGCGGGTTTGGAGTCCCGTATTGGGTGAGTATGGGTCAAGCACACTATATTAAATTCTGAAAGAACTCACAAAATATTAAAAGAAGAAAAGCATTCAGAAGTTAACTTGTTCATTTTCGTTTTAATTAAGTTAGCTTTAGTTTCTTAATATCTAACTTAGAACATTTTATCATGATACAATTTTGTTAATCAAACTTTAAATATGCTAATATCTGGAACTGTACAGGCGAAAACAAATCCAATGATGTTGAGAGATGTTCACAGTTTTTCTGAGAAAGAGATGGCTTCCAACAGAGTGAGGATTTGAAAACAGTGTGAATGTGAACAATCTAGTTTTGTAAAAAAAAAAAAAAAAAAACTTTCCCAAGACAGTAAACCGTGCGATTACAAATGCTAACATATTATCCTTTTCCTCTGTGGTTTGGCTTTTGAAG
Seq C2 exon
ATGTCAAGTGACCCCAACAATCAGAAGAGGGTGTTCCGGGGACTTGTCCAGGTGCTGTCCTTTTTCTCTCAAGTGCAGCAGCAAAGAGAAGTGTGGCAATTTCTGTCCAGCTTACCAGACGTGTTTCAGAATGACACCTCACTGAATAGTATATTTGGCGTTCTTCAAAAGGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015248:ENSRNOT00000036359:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146371=FNIP_M=PU(25.0=51.6)
A:
NA
C2:
PF146371=FNIP_M=FE(46.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]