RnoINT0010125 @ rn6
Intron Retention
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190315584-190326139:+
Coord C1 exon
chr1:190315584-190315881
Coord A exon
chr1:190315882-190325892
Coord C2 exon
chr1:190325893-190326139
Length
10011 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATCTTCTCTTTTTATTCTAGGTG
3' ss Score
12.12
Exon sequences
Seq C1 exon
GTTCCACTTTACCGCCAGCAATTTTATTCCATGTTTATAAAAAGAGCACTATTCATTGGCCGCAACTGGAAGTTGATGTTTCTACAGATAATAGTAGTTTTGGTTGTCACTACATATCTCTTATTATCTCTGCATTTAGATGATAATGATATACCTGAAAGGGAACTGAATTTGAGTCACTATGGTAAAACCATTGTGCCTTACTCAATTTCAGGAAATTCTGATTTAGCTCTGAATCTCATAAAAAACCTGAAGATTTTTCTAAAGTCAAAGAATCAAAGCTTAAAAAAAATAAAAG
Seq A exon
GTAAGATTCATTTACAAAAAGAATTGACTACACTCTATAAAGACCTATTTATCATGCAATGGCTATAATTATGATATTTAACTACTTGTTTCTTTCTCATCCCACTAATTACAAGTATCATAAAAGTAGCTAAATCAAAAGCAAAATATGCACTTAGACACAACTGTCCACAAGTTAGTAATTGTGGAGACATTTTTTGGCTGAATATGTCTTTGCTAATTTCATCACCTTTTATGGGGATGGGAAAGATGAAGATATGTTGCTACTGTTCAATTTAGCCTTATAAGTCTTATTCTCATTGAAAGAAAACAGCAATGCCAACCAACCAGAGCTTCCAGGGACTAAACCACTACCGAAAGACTATACGTGGACTGACCCAGGGCTCCAACTGCATATGTAGCAGAGAATAGCCTTGGGGCATCAGTGGAAGGGGAAGCTCTTGGTCCTGCCAAGGTTGGACCTCCTGTGCAGGGGAATATGGGGGGGGGCAGTAAGGGGGATGTGTGGGGGGAATACCCTTATGGGGGAGGGAAAAGGAAGGGGATGGAGGCTTATGGACAGGAAACCAGGAAGGGGAATAACATTTGAAATGTAAGTAAAGAAATATATCTAATAAATTTTTTAAGTGAAAAAAAAAAAAGAAAAGAAAGATTAGCGTCTTCCAGAGCTCTCACATTATGGGATGTTGGTTCCTCTATAGGAAGGCTATCCTTTTTAAAATTAGTCATTCCATAAACCAGTGGCTGAAGAGTTAATTGACTTCATAAGTAATCTCTGAAGATGATGTAGGTAATTGTTTTGTTCAATTGATTTACTCTGTATGTACCCTTGGTAAGAACCATAAGTCTATATGTTCTCTGTATTGTTTTTATTAATGCGAAAAACAATGAGCTTAGCTAACTCATTCAATATCTATGCTATGTTGAAAAGTACAAGACCTAGCCTACGATGAATTTAAACTTTGAGTAAACAGTTTTTTAATTTTATTATTTTTCTTGTATATTTTATGAATTTACATTTCAAATGTTATCCCCTTTTCACCTGAGTAAACTGTTTTTTAAAGTCAAGCATTTTAGAACACCAAACATTAACCAAAAGCACAGAACAAACTGGAATTTAACTACTTTAAGAAAATTGTGAGGCTTCTGTAAGAATGAGGTTTATAGCACTATAGCTTAGGGTTACTCTACTTACCCACTCTCACTGGCTTAATAGAACTCAACAAAACCCACTAATAGCCTTGAAGCTGCCAAAAAGGATAGCAGACACATGACTGACCAAACAAGTAGATGCCAGGCATAAAAATGAATGCAGTATTATTTATTAAGTCTAACAGAGAAGTCTGTACACTATACAGAATGTAGAAATACAGTGTTTACAAGAATTGATCCATATAGGTTACTAAATAAATCAGGGGAAACATTTTTAAAGAATAAGAAAGAGGAGCAACAGAGTATTAGTCTATACAAATCATTAAAATATGCATCATAAATATCCACTTTTAAACATAAAAAGAAAGAAGTTATGGACTGAATTGTGCCCCACAATTTTAAAATGCCAACAAGTGTCTTGTTTACTATATTCATAGGTACAATCTTGAAATTCTAATTAAATTTAAATTAATTTAATTAATTTGAAGTTCTAATTAAATTTAAACCAACATAGAACCCAATTCTGTGACTGTTTACAAAGAAACAAGTGGGAACTGGAGAGATGGATCAGCTGTTAAGAGCTCTTGCTGCTCTTCCAGAGGACCCAAGTTCATTCTAAACCCACTATCAAGCTACTCAACTGTCTCCAGGGGATCAGATGCCATTTTTCTGGCCACTGTGGGTACATGCCTGGCATATACATACATAGACATATGTAATTTAAGATTAGAAAAGAAGAAGGTAGATATAAACATGCGTGCAGAATGAAAAGACCATGTGAAGACAGACAAAACTGCTACCCAAATGCAAGGGAAAAGTATCAAAAGAAACCAAACCTCCCATCACCTACTCAGACTTCTAGGCTTCAGACTGAAAAATTAACTTCTATTGCTTCATTCATCCAATCTGAGAGACTTCTTATGGAAACCTACAAAAATAAAGATACATTTTGGTGCCAGGAAGTTAGTGTTATATACCATATACCCACAAGTATGAAACTGGCTCTTGAATAACATAACAGGAGACTTATAGAGTTTGAACTTTTTATGTTAGAAAGAATTCTAGTTTTGAAAATACTTTTGGGAGATGATTTTGATAAATATGAATACAAAAAAGAAGAAAGCCTTAAAGAAAATGTTTATCTTCAAAATAGATTATCATGAAGATAATATAGTTGAAATACAGGCTAATGAGTAGCTTGTTATTGAAAATTAAACTCAACTCCTCAATAAACTCAATTCCCATAATAAAAAGACACAGATTAACAAACTGGACATACAATGAGGACCCAGCATTTTGCTGCCTACAGAAATCACACCTCACAGACAATGACAGACACTACCTCAGAGTAAAAGGCTGGAAAACAATTTTCCAAGCAAAAGGAGTAGAAGGCAGGAAATAATCAAACTCAGAGCTGAAATCAACCAAGTAGAAATAAAAAGGACTATACAAAGAATCAACAGAACTAAAAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACTCTTAGCCAGACTAGCCAGAGGACACAGAGACTGTGTCCAAATTAACAAAATCAGAAATGAAAAGGGAGACATAACTACAGAATCAGAGGAAATTTAAAAAATTATCAGATCCTACTACAAAAGTAAACAAAACTTGAAAATCTGGGGGAAATGGACAATTACCTAGACAGATACCAGATACTGAAGTTAAATCAGGAATAGATAAACCACTTAAACAACCCCATAACTCCTATAGAAATAGAAGCAGTCATTAAAAGTCTCCCAACCAAAAAGAGCCCAGGACCAAATGGGTTCGGTGCAGAATTCTATCAGACCTTCACAAAAGACCTTATACCAATACTATCCAAACTATTCCACAAAATTGAAACAGATTGAGCGCTACCGAATTCCTTCTATGAAGCCACAATTACTCTTATGCCTAAACCACACAAAGACGCAACAAAAAAAGAGAACTTCGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAGAAAAAAAAAAAAAAGAGAGAACTTCAGACCAATTTCTGTTATGATTATTGGCACAAAAATGCTCAATAAAATTCTTGCAAACCGAACACATCGAAACAATCATCCATCTTGATCAAGTAGGCTTCATTCCAGGTATGCAGGGATGGTTTAACATATGGAAAACCATCAATGTAATCCACTATATAAACAAACGGAAAGATAAAAACCACATGATCATTTCATTATGCTGAGAAAGCATTTGACAAAATTCAACACCCCTTCATGATAAAAGTCCTGGAAAGAACAGGAAATCAAGGTCCATACCTAAACATAGTAAAAGCCAAATACAGTAAACCACTAGATATCATTAAACAAAATGGGGAGAAACTTGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTCTCTCCCTATTTATTCAATATAGTTCTCGAAGTCCTAGCCAGAGCAATCAGACAACAAACGAGATCAAAGGGATACAGATTGGAAAGGAAGAAGTCAAAATATCACTATTTGCAGATGATATGATAGTATACTTAAGTGATCCTAAAAGTTCTACCAGAGAACTACTAAACCTGATAAACACCTTCAGCAAAGAGGCTGGGTATAAAATTAACTCAAACAAATCAGTAGCCTTCCTCTACACAAAAGAGAAACAAGCCGAGAAAGAAATTAGGGAAATGACACCCTTCATAATAGTCCCAAATAATATAAAATACCTTGGTGTGACTTTAAACAAGCAAGTGAAAGTTCTGTATGATGACAACTTCAAGTCTCTGAAGAAAGAAATTGAAGAAGATCTCAGAAGATGGAAAGATCTCCTATGCTCATGGATTGGCAAGATTAATATAGTAAAAATGGCCATTTTGCCCTAAGCAATCTCCAGTTTCAATGCAATCCCCATCAAAATTCCCATTCCAATTCTTCATAGAGTTAAAAGGAACAATTTGCAAACTCAACTGAATAACAAAAAACCTAGAATAGTTAAAACTATCCTCAACAATAAAAGGACTTCTAGGGGAATCACTATCCCTGAACTCAAGCAGTATTACAGAGAAATAGTCATAAAAACTGTAGTATTGTTACAGAGACAGGCAGATAGACCAGTGGCATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATTTTTGACAAAGGAGCCAAAACCATCCAATGGAAAAAAGATAGCATTTTCAGCAAATGGTGCTGGTTCAACTGGAGGTCAGCATGTAGAATGCAGATTGATCCATTCTTATCACCCTGTACAAAGCTTAAGTCCAAGTGGATCAAGGACCTCCACATCAAACCAGATACACTCAACTAATAGAAGAAAAAATGGGGAAGAATCTCGAACACATGGACACTGGAGAAATTTTCCTGTACAAAATACCAATGGCTTATGCTCTAAAATCAAGAATCAACAAATGGGATCTCATAAAACTACAACGCTTCTATAAGGCAAAGGAGACTGTTGTTAGGACAAAATGGCAAAAAGCAGATTAGAAGAAGATCTTTACCAATCCTAGAACAGATAGAGGGCTTATATCTAAAATATACAAAGAATTCACGAAGTTAGACTGCGGAGAGACAAATAACCCTGTTAAAAAATGGGATTCAGAGCTAAACAAAAAATTCACAGCTGAGGAATGCCGAATGGCTGAGAAACACCTAAAGAAATATTCAACATCTTTAGTCATAAGGGAAATGCAAATTAAAACAACCCTGAGATTCCACCTCACATCAGTCAGAATGACTAAGATCAAAAACTCCGGTGACAGCAGATGCTGGCAAGGATATGGAGAAAGAGGAAGACTCCTCCATTGTTGGTGGGATTGCAGACTGGTACAACCATTCTGGAAATCAGTCTGGAGGTTCCTCAGAAAATTGGACATTGTACTACCTGAGGACCCAGCTATACCTCTCTTGGGCATATACCCAAAAGATGCCCCAACATATAACAAAGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATGCCAGAAACTGGAAAGAACCCAGATGCCCTTCAACACAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAACACTACTCAGCTATCAAAAACAATGACTTCATGAAATTCATAGGCAAATGTAATGAACTAGAAAATATCATCCTGAGTGAGGTAACCCAATCACAGAAAACCACACATGGTATGCACTCATTGATAAGTGGATATTAGCCCAAATGCTCAAATTACCCAAGATGCACAGAACACATTAAACTCAAGACGGATGACCAAAATGTGAATGCTTCACTCCTTCTTTAAAATGGGAACAAGAATACCCTTAGGAGGGAATAGGGAGGCAAAGTATAGAACAGAGGCTGAAGGAACACCAATTCAGAGCCTGCCCCACATGTGGCCCATATGTATACAGCTAATATGTATACAACTAGATAAGATGGATGAAGTAAAGAAGCGCAGGTTGACAGGAACCGGATGTATATCTCTCGTGAGAGACACAGCCAGAATATGGCAAATATATAGGCGAATGCCAGCAGCAAACCACTGAACTGAGAATGGGACTCCTGTTGAAGGAATCAGAGAAAGTACTGAAAGAGGCGAAGGTGCCTGAGACCCCATATGAACAACAATGCCAAGCAACCAGAGCTTCCAGGGACTAAGCCACTACCCAAAGACTATACATGGACTGACCCTGGGCTCCAAATTCATAGGTAATAATGAATATCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTTGGTCCTGCCAAGGCTGGACCCCCAGTGAATGGAATTCTTGGGGGGAGGGTGGTAATAGGGGAGGATGGGGAGGAGAACACCCATATAGAAGGGGAGGGGAGGGGTTAGGAGGATGTTGGCCTGGAAACCAGGAAAGAGAATAACATTTGAAATGTAAATAAGAAATACCCAATTCAATAAAGATGGAAAAAATAAAAAATAAACAAATAAAAATTAAAGGAAGAAGCAAATAGAGGATAGAGAGATGGCTGTGTGACTAATAGAACTGGGTGCTCTTCCAGAAGACATAGATTATGTTCCCAGCCCCCACATGGTGGCTCACAAATACCTGTAACCTCAATTCCAGGAGACTCAGTGCATTCTTCAAGCCTCTGTGGTTACCATGAATGCAAGAAAAGCACAGTAATTCATGTAGGCAAAAAAACCCAACCCATATATATTACATTTAAAAACAAAATAAATTCTAAGAAATAAAACACAGAAGCAAATAACTTGATTTAATTGTATTCTGCTACTTTGTGGAGAGCAGAACATGTAAGTGCTAAAGATATTTAGGCAGGGTGATTTCTAAACAAAGTGTTATAATTACACTTTGGTTTGTCCTTGCCACCTATAGTAAAATGTAAACAGAACAGATAGAATTAAGGATGAAATATTAAGCAAAACGGAAAGTTGCAAAGAGAAAAATTATCACTATATCCATAGTATGAAGAGTAAATTTTCAGATGTTCTATAGAACTCACCAGTATGTTTGGACAATTTATTTAAAATATATGGTTATGTGACTCCTGTCTCAAAATGTGACATCAAGGAAGGCTGTTGGGATGACAGTATTCCACATAACAACCATTCCAGCTTCAAATATGTATTCATATCAAGAAAAGAGAGGACTAACAAAAGTGGTTCAGACAGTTGCAGAGCTCTCATGGCTACCACATGCAGAGAAGTTTTAGGCCTAAGAACTAAAGCTGGGGTTAGGGCAAGGATACTATATATTACCAGGCACATAAGAACTACTTCTTCACCATGAAGAATAGGGTAGGTACAGTTACTTGATTAGCACAGAAGGCAGGGCAACTAAAGTAGACTGCTCGTTTTGGAATCAGAATATCTGTGCTATACCAAATAATACATTTCTGTTGTGTCTTTTTTTAAGGTTATAATGTAATTTTATTTCTCCCTTCCCTTTCCTTTTCCAAAGTCTCCCATGTGTCCTGCTCCACTCTCCTTAAAAGTCAGGTCCTCTATTTTGACTCACTGTTATTACACACACACACACACACACACAGACACACACACACACACACACACACACATTTACATGAATTTCTAAATATAATCTATTAAGTCCATATAACATACTTGTATTATGTTTTTATAGCTGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAACTTGAAAATCTGGGGGAAATGGACAATTACCTAGACAGATACCAGATACTGAAGTTAAATCAGGAATAGATAAACCACTTAAACAACCCCATAACTCCTATAGAAATAGAAGCAGTCATTAAAAGTCTCCCAACCAAAAAGAGCCCAGGACCAAATGGGTTCGGTGCAGAATTCTATCAGACCTTCACAAAAGACCTTATACCAATACTATCCAAACTATTCCACAAAATTGAAACAGATTGAGCGCTACCGAATTCCTTCTATGAAGCCACAATTACTCTTATGCCTAAACCACACAAAGACGCAACAAAAAAAGAGAACTTCGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAGAAAAAAAAAAAAAAGAGAGAACTTCAGACCAATTTCTGTTATGATTATTGGCACAAAAATGCTCAATAAAATTCTTGCAAACCGAACACATCGAAACAATCATCCATCTTGATCAAGTAGGCTTCATTCCAGGTATGCAGGGATGGTTTAACATATGGAAAACCATCAATGTAATCCACTATATAAACAAACGGAAAGATAAAAACCACATGATCATTTCATTATGCTGAGAAAGCATTTGACAAAATTCAACACCCCTTCATGATAAAAGTCCTGGAAAGAACAGGAAATCAAGGTCCATACCTAAACATAGTAAAAGCCAAATACAGTAAACCACTAGATATCATTAAACAAAATGGGGAGAAACTTGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTCTCTCCCTATTTATTCAATATAGTTCTCGAAGTCCTAGCCAGAGCAATCAGACAACAAACGAGATCAAAGGGATACAGATTGGAAAGGAAGAAGTCAAAATATCACTATTTGCAGATGATATGATAGTATACTTAAGTGATCCTAAAAGTTCTACCAGAGAACTACTAAACCTGATAAACACCTTCAGCAAAGAGGCTGGGTATAAAATTAACTCAAACAAATCAGTAGCCTTCCTCTACACAAAAGAGAAACAAGCCGAGAAAGAAATTAGGGAAATGACACCCTTCATAATAGTCCCAAATAATATAAAATACCTTGGTGTGACTTTAAACAAGCAAGTGAAAGTTCTGTATGATGACAACTTCAAGTCTCTGAAGAAAGAAATTGAAGAAGATCTCAGAAGATGGAAAGATCTCCTATGCTCATGGATTGGCAAGATTAATATAGTAAAAATGGCCATTTTGCCCTAAGCAATCTCCAGTTTCAATGCAATCCCCATCAAAATTCCCATTCCAATTCTTCATAGAGTTAAAAGGAACAATTTGCAAACTCAACTGAATAACAAAAAACCTAGAATAGTTAAAACTATCCTCAACAATAAAAGGACTTCTAGGGGAATCACTATNNNNNNNNNNNNNNNNNNNNNNNNNGATGTTTGCCCCGCGATACCGGGAAAGGGGATAACACTCGAAATGTATATAAGAAATACTCAAGTTAATAAAAAAAAATTAATGGTTGCAGTTGTCCTCCAATGTGGGATTGTAATAGCCCAGGATTACCGAGGAAAGTATAGGAGAGTTTCAACCCTAATAGATCCCTCAGATGAGGACAGGAGCCTAGCTCTCTCCCCTCTCCCAACCTGATGCCATGAAGCCAGCTGCTCCACCATCAACCTTAGTAAGAATTTACTACCCTGACAGTTACGAGGTTTCACTCCTTGTTTGAACATATCCATACTGTGGATACATAAGGTACACCCCCAACCCCACTCCTGGTCCCTACAGCTCCTGAGTGTGCATATGAAGCATCTCCTGTCCCGGTCAAAAATACCTTGCCCCAGATACACTGGCCACCTCCCCAGGGACATAAATATGCCCCCCCATTAACAGAACCAGCTGTTCCTGGATGGTGGTTCTTCGCCCATGTACTCACCACCAACCAAGATCCTTCCTGCAACTAGCTAAACTTCTCTCCCTCCAGTCCAGCCTGATGCACACGGGGACTGGGCTACTCTAAGGGAGAGAAGTAGACACAGGCCAGCAGCTCACACCCAATGTGGCTGTAACAGGACCTCTGGTAGGCTATAGGCCAATTCAAAAATTTATACAGAAATGCAAGTCAAACGGAATAGCCAAAGCAACTCTTTAAAATAATGAACTATGCTTATTCTTTACAGTTAAGAAAAGTATATTCTTAAACTAGTCATAGTGCTGTGTACCTTGAACTCCAGTACTTGGGAGAAGCAGGTAGATATCTGTGAGTTTGAGACCAGCCTAACTTACATAGAAAGTTTCAAGACAGGCATACATAGAGAAAGCCTGTCTCAAAAAAATATTCTTAATATATGATTGGGTTGTGAATTATACAATGAGATCATTGTAAGATTAATGATGGAGTAAAATAGTGAAGAAAAACATCCATTGTCAGAATTTGGAAAATAAAATGGTAAGTGGAAAAATAAACCCCCACACCTTTTTTAAATCCATTCTTCCTAATGTAAGTTCTAAGTAACATAAAACATGTTGGCGCACTAACATCTTCTCTTTTTATTCTAG
Seq C2 exon
GTGATATGAACAATTACATATTAGAAAATAAAGATTGCCGAACCTTCTGCATTATTGCACTTTCTATTAAAGTTGAGAGAAACAAAACAGTGCTCACCATTTTCTTCAATAATGAGGCATACCACTCACCTGCAATATCCCTGTCAATATTAGACAACATTCTTTTTATGACACTTTCTGGCCGTGATGCTTCCATTACTGCCTTTAATAAGCCTCAGCCTCTCCCTCATTATGGTTCAAACACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783:ENSRNOT00000001933:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(19.7=77.0)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]