HsaINT0000565 @ hg19
Intron Retention
Gene
ENSG00000238098 | ABCA17P
Description
ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene [Source:HGNC Symbol;Acc:32972]
Coordinates
chr16:2456604-2460450:+
Coord C1 exon
chr16:2456604-2456910
Coord A exon
chr16:2456911-2460176
Coord C2 exon
chr16:2460177-2460450
Length
3266 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
GATATTTTGTTCCCTTCTAGGTT
3' ss Score
11.14
Exon sequences
Seq C1 exon
TTCAGTCTTCTCTGCCAACAATTTTATGCCATGCTCCTGAAAAAGGTCACATATTCTTAACACAACTGGATGTTGATGTTATCAATACAGATCCTGGTCCCTCTGGTGATCATCATGTTAAGCCTCACATTCTTCAACTTCAAAGAAAGAAGCATAGAAAATGTCCCATTGGAGCTGACTCTGAAAACATATGGTCAGACCATTGTTCCTTTCTTTATTTCTCAGAATTCCAGGCTGGATCCTCAACTTTCAGAACGCTTTGCAAATATGTTTATGGTTGAGGGACAGATTCCTCTGGAGGTCCTAG
Seq A exon
GTAAGTATGTACCAGGCCCAGGAAAATGGGGCATGAAACAATCCTGTTGTTCTTTGTAGTGAAGCTGTGTGCTGGTGGGCCACGTGGTGCTCTCTGAAGTTAGAAATAAATAGCCAGAAATCTCAGAAAACCGTATTTCAAACCCCAAATGACAAGAAAGGTAGAGTCCCTAGAAATAAGACCAAGTATGTGTCTTTCTAGGAATGAAATCATGCCCCCAAATAAAATTATAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTTGAGATGGAGTCTTGCTGCAATGCCCAGGCTGGAGTGCAAGGGTATGATCTCGGCTCACTGCAACCTCCACTTCCTGGGTTCAAGCAATTCTGCCTCAGCCTCCCGAGTAGCTGGGACTATAGGCACCTGCCACCACACACGGCTAATTTTTGTATTTTTAGTAGAGAAGGGGTTTCACCAGATTGGCCAGGCTGGTCTTGAACTGCTGATCTCAAGTGATCTGCCTGCCTCGGCCTCCCAAAGTTCTGGGATTCCAGGCATGAGCCACTGCACCCAGCCCCCCAAAATAAAATTGAGAAACTATTCAATATGTTTGAATTGTATTGAAAGGACAGCTACACTTTTTTTTTTTTTTAGATGGAGTCTTGCTCCATTGCCCAGGCTGGAGTACAGTGGTGCCATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAGTTCTCCTGCCTCAGCCTTCCGAGTGGCTGGGATTACAGGTGCATGCCACTGTGGCTGGGTAATTTTTGTATTTTTAGTAGAGAAGGGGTTTCACCTTATTGGCCAGGCTGGTCTTGAACTCCTGACCTTGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGACGTGAGCCACCACGCCCGGTCAAGATCTACACTTCTATCAAGGGAGTTTATGGACGAAGTGGTGATAGATATAAAGAAAACTAGGCAAATGAGAAAAGGAGAATATTATTAACTTCAGGGGGAAAAGTTGTACAACAAAACATAACATACTACTTGGTTCAGTTGTAAATAATTTTTGCTTAGTCATCATAATCTCAAAACTGACTATTGGCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGTTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAATCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGGGCAGCTGTGGTCTCAGCTACTCGGGAGACTGAGGCAGGAGAACAGCGTGAATCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAACAAAAAACCAAAACTGACTATTGATTTAGCGAAAATCATGATGTAACTCTAGTGGGAGGAAGTCTGTGGGGGTTGTAAGAGAGGATACTTGTAAGAGAACACAATCCTTGCTTCCATCATGAAACATCAACAGCTAGGTGATGTGCTGTTTAGCAATGTGGAGAAACACCAGGTAAAAGATGGGAAAAGGGTTGCTTCTGGTGAACAGCCATTGGGGAGGCTCAGGGCTAGGGCAGAGCACTGCTGTTTCTTGTATAGCTATTTGATTTTTAAAATTATATTCACGCATTATTTTGATTAAATAACATTTTAAAGTAATTACTTTTTTAAAATAAAGATTTCAAATGCAGAACATGATGTAACAAAATGGTTGGGATCATAACACCCTGCCTCTCTAAGCCTTGGTTTCTTCATACTCCAAATGGGGAGAAGACAGACTTCACCTCACAGTATCATTGGGTGATTTCGTGAGTGAGTGCTTGTTAAGTGCTTTGCACAGGTGCACCCAGTGAGCACTCAGACAGTGGTGCTGGTACTATTGTTGTTGTCATTATGATTGAAGGTCCCTTCAGCACTAAAGAGTTTAGATTTCTGGACTCTAGGTGGGTTGTATATTTGACTTGGCACTGTGTGCTGGGAATACAGTAATGAACAGCATCATTACCTGAGGCCTTATGCAGAAGTGATAGTTACAATACAAAGTGACAGTGACTGCGATTGGAATACTGTGGAATTACACAGACATATCTCAGTCATGGAGGGTCAGAGTAGGCTCCAGAGTAAGAGCCCACGGTATGAGTAGGCATTGACAAATAGAAGGGAAAAGTAACCCAGAGAACATTCCAAACAACAAGAAGAGCATTTGTAAGCATGGGGCACTGTAAGTCCTTAGGTTTGGCTGGAGCTAAAAGACGTGAGGCTGAGTTTGGATAGTGATGGGGTCTGTACCTCATGTGGAGGAATTTGGCTTTGTCGTGAGGACAGTGGAGAGCCACTGCAAGTTAATTGGTGGGGCGCATTATGGCCAGATGTGTCCTTTCAAACAGAAACCGGAGGTGCCAGATAGAAGGCAAGATCTGGCCAGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCTGAGCTGGGCAGATCACTTGAGGCCAGGAGTTCAAGGCCAGCCTGGCCAAAATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCTTGCTGGCGCACAACTATGGTCACAGCTATTCGGGAGGCTGAGGCAGGAGAATTGCTTGAAACTGGGAGGCAGAGGTTGCAGTGAGCCAAGATGGCACCACTGCACTCCAGCCTGGGCAATAGAGTGAGACTCTGTTTCGAAAAAAAAAAAGCGAGCTCTTCATTGAGGGCTACATAATCCAGGCACAGATAATGAGATCCAGACCCAGTTGAGGCAGTGGGAAGGAAAGAAGCAGACAATTGGAAGAGACTTAAAAGATTAATAGAGCCAGGCACAGTGGCTCACACCTGTAATCTCAACACTTTGGGAGGCTGAGGCAGGAGGATCACTTGAGCCCAGGAGGTCAAGGCTGCAGTAAGCTATGATCACATCACTGCACTCCAGCCTGGGGAACAGAACAAGGCTCCCTCTCTAAAAATACGAATAAATAAATAAAATAAAGGAAGAATAGACAAGACTCCAAGAGTAACTGGAATTCAGGGCAGAGTGGTGGGAGGAGGCCTGCTTTTAGAGGTCGGTGGAGGTTAGTGATGAAGTACCTAGGAGGAGCAGCAGGTTGTGGGAGACTGATAGTGAGTTCTCCCCATCCCAGTGGGCCTGGTGTGACACTCGTCCTGGTGGATATTTTGTTCCCTTCTAG
Seq C2 exon
GTTCTGTAGATGAGTTCCTATTGAAAAAGGCAAAAGAGGAGCCTGAGGACTTTGATAAGCTCTACTTAGTGGCAGCTTCCTTTGAAGACGTGGGAAATCACACCATAGTGACAGCGCTGTTCAACAACCAGGCATACCATTCTTCTGCCCTGGCTCTGGCGCTATTGGACAATTTTCTCTTGAAGTTGCTTTCTGGTGCCAGGGCTTCCATTACCGCAGCCAACCACCCTCAACCTCAGCCAGCCAGGGAGGATTCAGAGAATTTCCTGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000238098-ABCA17P:NR_003574:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)