BtaINT0006682 @ bosTau6
Intron Retention
Description
uncharacterized protein LOC777692 [Source:RefSeq peptide;Acc:NP_001071620]
Coordinates
chr25:1919470-1921480:+
Coord C1 exon
chr25:1919470-1919773
Coord A exon
chr25:1919774-1921206
Coord C2 exon
chr25:1921207-1921480
Length
1433 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
AGTGGTCTATTTTCTTCCAGGCC
3' ss Score
9.18
Exon sequences
Seq C1 exon
TTCAGCCTTCTCTGCCAACAGTTCTATGCTATGTTCTTGAAAAGGGCTACCTATTCTTGGCGCAACTGGATCATGATGCTGTCAATACAGATCCTGGTGCCTCTGGTCATTCTTAGCATCAGCCTCTCATTCCTCAACTTCGATATAAGCATGGACAACAGCCCATTGGAGCTGACCCTAAAATCATATGGTCAAACTATTGTTCCATTCTACATTTCTCCGAACTCCAGGCTGGGTCCGCGGTTTCTAGACCATCTGACAGATGTGCTTATGGCTGAGGACCAGAAACCTCTGGAGCTGCAAA
Seq A exon
GTAAGTACCAGGCCCAGGAAAACGGGGCAGGAAGCAGGCCCATTGCTCCCTGCAGTGAAGCCATGTGCTTCCAGGCTACATGATGCTCTCTGAAGTCAGAGTGTGTGGCTAGAAGCCTCAGAAAAAATCTTTCAAAAGTAACAGGAAAGGGAAAGTTCCTAGAAATGGGACCAAGTTGTGTCTTTCTAGGGACTAAAGCATGTCCAAAAACGAAACAAATGTTCCGTTATGTTTGAACGTGTTGAGAAGAGATTTACACTTCTGCCAAGGGAGTTTGTGGGTGATTTGGTGATAGATGGGATAAAAACTAAGCAGATGAGAAAAGGAGAATAGTATTTCCTTCAGAGGGGCACAGGTGTACAGAAGAAAGAAACATGTCATGGTGTGCTACTTGGTTCAGCTGTGAATAATTTCTACTTTTTCATAATGAATGTCAAACTGACTACTGGTTAAACTGAATTTATGATATAACTCTGGGGCAGGTGGGGAGGGGTGGGGAAGGCCCTAGGAGGTGGGGATAGTCCTCTAAGAGAGCCAAGTACTTGCTTCCGAGATAGACTGTCAGTGGAGAAATGGACTATTTAGCGATCCTGAGAAGCACAGACTGAAAGACTTCAACATAGTTGCCCTGGTGAGCAGGAGCCAGGGACAGTGACGCGGAAGGCCATGGCACTGTCATCTCTCATTGTAAGTTTTGTATAATTATTTGATTTTTAAAATTATATTGATGTATTATTTTAATTTTAAATGAAAATTTTAAGGATTTATTTCTAGTAAAGTACAAGAGATCAGCTGCAGAAATGGTTGGGATTGTAGTGCCTTGCCTCTCCCAACCTTGGTTTCCTCACACTGTCACCAGAGGGTCCCCAGGGGAGTGCCCATCAAAGGTGCTTTGCACTGCAACACTGGCACTCAGTAACCCTCAGCCACCAGTACAGTGATCATTCCAGCATAAAAATTCCAGGGTTCTTGGTCAGTCAGCCTGTGTGCTAGAAGCGTGGTGATGAACAGCTCTCAGAGAGCTCCTAGCCCAGAGGTCTTGTGGATAAGCAGTAATCCAGAGACATAGTCGGTGATGCTCACATAGACATAGCTCAGCCTCAGAGGGTCAGCGGGCGTGCCTGAGTTCAGAGCCTCTGGTGTGAATGGGGGCTGCACAGCAGGGAAGCCTGAAAGATGCCTGGACAAGACTTCACTGCTGTTCCAGTCAATGAAAAGAAAACTTTCTTGAGGCCTCAGGCCTGAGAGGTTCAGGCAGGAGGCAGCCCTGCAGGCCAAGTGGATGACTGGAAGTCGGGGCATGGCCATGACAGGAGGACCCCACTGGGGATGTATGTGGGGCTTGGTGAGGAGAGAGATGTTCAGGAGGAGCCGCGGTCCTCCCTGCCTCGCGGGGCCTGGTGCGACATGCTCAGTGGTCTATTTTCTTCCAG
Seq C2 exon
GCCCAGTGGAAGCATTCCTCCTGAAAAAGTTAGAGGAGGAGCCCGAGGTCTTTGACCAGAACTACCTGGTGGCCATTTCTTTTGACGACATGGAGAACCACACCGTCGTGACAGCGCTGTTCAACAACCAGGCGTACCATTCCACGGCCCAGGCGCTGGCGTTGGTGGATAACGTCCTGTTCAAGTTGCTTTCTGGGCCCAGCGCGTCCATAACGGTTCTGAACCACCCTCAGCCTGAGTCGAGCATGGAGACCGCAGAGGACATCCTGTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034643:ENSBTAT00000037495:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(19.4=76.5)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(22.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGATCCTGGTGCCTCTGG
R:
GGTACGCCTGGTTGTTGAACA
Band lengths:
357-1790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]