MmuINT0007767 @ mm10
Intron Retention
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24289336-24291859:-
Coord C1 exon
chr17:24291553-24291859
Coord A exon
chr17:24289610-24291552
Coord C2 exon
chr17:24289336-24289609
Length
1943 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGCCTTTGGCTTCCTCCCAGGTT
3' ss Score
8.55
Exon sequences
Seq C1 exon
TTCTGTCTTCTCTGCCAACAATTCTACGCCATGCTCTTGAAAAAGATCACGTATTCTCGGCGCAACTGGATGCTGGTGCTCTCGGTGCAGGTTCTGCTGCCGCTGGCGATCATTATGTTAAGCCTCACCTTTTTTAACTTCAAATTAAGGAAACTGGATAACGTGCCACTGGAGCTGACTTTACAAACGTACGGCCAGACCATTGTTCCATTTTTTATTGCCGAGAATTCTCACCTGGACCCTCAACTTTCAGATGACTTTGTAAAAATGCTTGTGGCCGCAGGGCAGGTTCCTTTGCGTATTCAAG
Seq A exon
GTAAGAAGCAGGGCACAGGGCCTGAGCAGGAAGTGAGCCTGCTTTTCTTTGCGGGGAGGCTATGGCTTTCTGAGCCACGCAGTGCTCTCCGACGTCAGACTGAATAGCTGGAAGGCTCAGGAAAATGTCATTTAGATTCTGGCTAACTGGAAGTGGAGGGCTTCTAAAGGCGAGACCCTATGTGTCTTTCTAGAGGTTGCGGAGCCTTGTAAGAAATTGATCATAGAGGAAGGTCTGACCAGGTCACTGACAGCAGCATATCCTTGAAAGCAGGTGGTTATATGCCAGGCCCTCCGGATCTTTTTCCATTTCCCGTCCGTGAGAGACTCGTTTGCACTTCCACACCCCTTTCATATTCTATCACAGGCCCCAATGCAACAGGGTCAATTGACCATGAACTGTACTATTGGCTAAAACAAATCTTCTTTTTTTCTTTACAAGTTGATTATCTCAGATATTGGTTAGAGTTTCAGAAAGCTGGCTTAAGATATAATGCTTAGTAAGGCTTCTGTTTCTCTGTGTATCAAATTGGGATAACTTTTCTGTATCCTTAGAAGCAATTTTCCAATGGATATTTTGTGTAGTTGGTGTCCAGTCTGCTGTAATAAAGTCATCATTAGTGTCTTAGATCGGTAAAGGTCTTTTTCAGCTTTAAAGTTTATATATATATGTAAGTAGGTGTTCTATTACATATGGCATTGTGTACTGGGAATATGGTATTGAGCAGAATTAGTACCAACCATCAGAGCACTTCTGAACAAGAAGCCTCTGACGACTGACAGACAGTTACAGAGTGGTAGCAGTGATTCTAACAGACACATCTCAACTTTAGAGGATTCCAGGTGCCATCTGAGTAGTGGAAAGGAAAAATAACCAAAGGCATTCGAACTACAGGAGGACCTGCAAGCTTACAGGACTCTTAAGATCATAGGTGTAGTAAGAATGAATGTAAGGCCATGAGGCCAAGAATCCAGAGAGCTACTAACTAGTATTACATGCAACAGAGAAGAAAGTAGAGGTTTGTTCTGGCACGGGTGGTGAGTTGAGAGGGTCAAGAGTAAGGTATCATCTGCTCGGCTTCTGAGGAGAGCGTCACGTTGTATGTGGTAGCAGGAGGAAGGGGAGAGGAAGCTGAATCTACTGCTAGAACTCACCATCTCCAACAAGAAGTAGCCCACGCCTACTACAGCAATAATAACCCTTAGGCTGAAGCATCCCAGCCCACATGGTCATCCACAACAAAGTTCTCACCGTCTTTTAGTGTGATTGCCCTGGGGACTGCCTGTCTATATAGCTTCTGTAGGGAACAAACTACCTCCAAACCATAACACAGGAAGTGAGTTCTAAGCCAGGCGAGGTGGCGCATACTTTTAATTCTAGCACTCAGGAGGGAGAGGAGGCCAATCTGCTTCTGTGAGTTTGAGGCCAGCCTGGTCTATAGAGTGAGTTCCAGGTCAGCCTGGGCTACATAGTGAGTCTCTGTCTCAAAAACAAATGACAACCAAAGCAAAAGAGAAGGTGCATTTTACACTATGTGGATGTGTGGCTTTGCCTAGAGGTCAGAGTCGCTGCAAGTAGGTAGGTATTAGGTATGTCCTTCCACACCAAGTATGCAGATACCATACAGATGGTGTGGAGTTTTGTTTGGGAACACATGGTCCCAGAAGCCATTATGGGGCTCAACCCGGTTGAGGTGTTAGAAAGGAAAAAGGTAGTTGGGATTCAAAAGGACTTAAGAGATGGAGATTTGGAGAGATCGGCTGGAATTCAATAGAGAGCTGGAGAGGAGGCCAGCCTTTGGGTGTGTGTGAGGCTGGTAATGGGGTACCCAGAAAGAGCAGAAGACTGGGGAAGCCCATGATGAGTGTACTGTGTGCCACTGGGCCTGGTGCGATGTTTTCTCAGCATTCTCTCTGCCCAGTGTGCCTTTGGCTTCCTCCCAG
Seq C2 exon
GTTCTGTAGAGGACTTCCTCCTGAAGAAGGCAAAGGAGGCTCCTGAGGGCTTTGATAAGCTCTACGTGGTGGCAGCTTCTTTTGAAGATGTGAATAACCACACGACAGTGAAGGCGCTGTTCAACAACCAGGCCTACCACTCCCCTAGCCTGGCTCTGACTCTGGTGGACAATCTTCTCTTCAAGTTGCTTTCTGGAGCCAATGCTTCCATTACCACAACCAACTATCCTCAGCCTCAGACAGCCATCGAGGTCTCAGAGTCAATCCTGTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435:ENSMUST00000121226:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(19.6=76.7)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(22.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGAGAATTCTCACCTGGA
R:
GACTCTGAGACCTCGATGGCT
Band lengths:
351-2294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types