RnoINT0010292 @ rn6
Intron Retention
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98595767-98596354:-
Coord C1 exon
chr10:98596241-98596354
Coord A exon
chr10:98595902-98596240
Coord C2 exon
chr10:98595767-98595901
Length
339 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTCTCCTGTCTCCTCTTTAGACA
3' ss Score
9.31
Exon sequences
Seq C1 exon
GTTTTTTGCCTCATTGCTTATGTGCCCTCGGTTATTCTGTTCACTTATATAGCTTCGTTCACCTTTAAGAAAATTTTAAATACCAAGGAATTTTGGTCATTTATCTATTCTGTG
Seq A exon
GTAAGTCACACTTCTATATTATTTCAGCTTTTCAGATCAGCTTAGGTAGAAGTCAGGTACACCTTGGCGCTGGGGCACAGGGCTGGGGCACAGGGTGTGGTGGCTCTTCCATGGTGGGCGCCTTGATCTTCCTTCTCCTCATCTCCTCTGCGAGACGCTGCTCACAGTATTTACAGCCAACAACCCCTGTCAGCGCATTGCTGCTTCCTGGCGTGGGACCGTCTCCGGGTGCCTGGTTTATTTGAGGATCAAAGGCCTAGTTGGAGGCACTATTTGTAAATAAATCTATGAGAGATTTGCAAATACTCCATCACCTGTTTTCTCCTGTCTCCTCTTTAG
Seq C2 exon
ACAGCATTGGCTTGTGTCGCAGTCACGGAAATAACTTTCTTTCTGGGGTATGGAGTTACGGCTGTTTTTCATTACACCTTCTGCATAGCCATCCCAATCTACCCGCTCCTGGGTTGTCTGATTTCTTTCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378:ENSRNOT00000005848:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.1=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGCCTCATTGCTTATGTGCC
R:
CTTTATGAAAGAAATCAGACAACCCA
Band lengths:
246-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]