RnoINT0010297 @ rn6
Intron Retention
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98583461-98584085:-
Coord C1 exon
chr10:98583959-98584085
Coord A exon
chr10:98583579-98583958
Coord C2 exon
chr10:98583461-98583578
Length
380 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
AAAACTTTTTTGCTTATTAGAAA
3' ss Score
5.29
Exon sequences
Seq C1 exon
GGCCCTCTCACAAAAAGCCAAACATAAGAAGTTTCCAGAACCACCCATCAATGAGGATGAAGATGAAGATGTCAAAGCGGAAAGGTTGAAGGTTAAAGAGCTGATGGGTTGCCAGTGTTGTGAGGAG
Seq A exon
GTAACCTGCCCTTGTTACTAAGTCATGTTCAGTGTTGTGAGGAGGTAACCTGCCCTTGTTACTACGTCATTTCAGTGTCGTGAGGAGGTAACCTGCCCTTGTTACTAAGTCATTTCAGTGTCGTGAGGAGGTAACCTGCCCTTGTTACTAAGTCATTTCAGTGTCGTGAGGAGGTAACCTGCCCTTGTTACTAAGTCATGTTCAGCCTCAATGGTAAATCACCAAGGCACTGGAATGAGGAAGAAACACTTTTCCTATGAATGTAAAATTTATATTAGACTGCCCTCTCAGAAGTGAATCAGTTCTTGGCATACATATATGAGATATGAAATGATAGATATCTAATTTGTGACTCTGTTTAAAACTTTTTTGCTTATTAG
Seq C2 exon
AAACCGGCCATTATGGTATACAATTTGCATAAAGAATATGATGACAAGAAAGATTTCCTTCACTCAAGGAAAACAACAAAAGTAGCAACAAAATACGTCTCTTTCTGTGTGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378:ENSRNOT00000005848:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(6.8=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTCTCACAAAAAGCCAA
R:
TCACACAGAAAGAGACGTATTTTGT
Band lengths:
239-619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]