RnoINT0010299 @ rn6
Intron Retention
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98582362-98583366:-
Coord C1 exon
chr10:98583275-98583366
Coord A exon
chr10:98582538-98583274
Coord C2 exon
chr10:98582362-98582537
Length
737 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGC
5' ss Score
10.4
3' ss Seq
ACATGGTTTGCATTTCGTAGATA
3' ss Score
6.09
Exon sequences
Seq C1 exon
GAGAGATCTTGGGACTGTTGGGTCCAAATGGTGCTGGCAAAAGCACGATTATTAATATTCTTGTTGGGGATGTTGAACCAACTTCAGGCAAG
Seq A exon
GTACGCTGTGGACAACCATGGGTTATGTCTAATCTGATATTTTAATTTAAGATACGCTCACTAATGTCAAATTATGAACTGGATGGCCAGACATTGTGTTTTAGTATTCTTAGTATAGGTTTATGAGATTAAGGTCTTTTGGTTATCTGAAAGTAATACACGTGAAATTTTCACACACAAATAGACATATATAGTTCTGCTTTTAGTGAGTCTTTACACGCATGATAGATTTATCCACCCACTTATGAAGACAGATACAGTAATTTCTGGAGATAGGCGGGTTAGTCTGGGCCCTGTCAGTGAGTCTGCAGCGTGCTTAGGACCCCACACCCATGTGCTTCTTCTTCCTGGCTCCCCTTTGCTCTCTTCACTGTGAATTACCAGGAATACTCCTTTCTTGGGACTTTGCCTAAGATTAATTTTTATGTCAATTACACCTTATACATGAGAAACAAAAAGGACTTGTTTTACTTATCTCATTAGTTTACATACAGTGTTTCAGTGAAGCCCTGTGATGATAATACTTGATTTCCCATCCACCAGTATAAAATTACCACCTTCTCTGGATGGAACTCTTAAATTCTGACTTACTTATTCATGACCTTGCACCATTACAAAGCATTAGGATGCTGGCCAGGTACTACCGTGACCTAGGGGAGGAGCTTAACAGATCAATGTACTTACTGTCTCCTTCACAACACAAAGCAAAGATATAAAACATGGTTTGCATTTCGTAG
Seq C2 exon
ATATTTCTAGGAGATTATGGTTCACATTCAAATGAAGATGATGAATCCACCAAGTGTATGGGTTACTGCCCCCAGACAAACCCACTCTGGCCAGATATTACTCTGCAAGAACATTTTGAAATTTATGGAGCTGTGAAAGGGATGAGTTCAGGTGACATGAAGGAAGTAATCAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378:ENSRNOT00000005848:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(20.5=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(39.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATCTTGGGACTGTTGGGT
R:
ACTGATTACTTCCTTCATGTCACCTG
Band lengths:
265-1002
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]