RnoINT0010304 @ rn6
Intron Retention
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98578043-98579136:-
Coord C1 exon
chr10:98578987-98579136
Coord A exon
chr10:98578123-98578986
Coord C2 exon
chr10:98578043-98578122
Length
864 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
ATTTTATCTTTCTTTTTCAGCTT
3' ss Score
11.55
Exon sequences
Seq C1 exon
ATGCATTGGAACAGTACAACATCTAAAGAGCAAGTTTGGCAAAGGCTACTTTTTAGAAATTAAACTAAAGGACTGGATAGAAAACCTGGAAATAGATCGCCTTCAAAGAGAAATTCAATATATTTTCCCAAATGCAAGCCGCCAAGAGAG
Seq A exon
GTAACAACTTTTAAAATATATTTAATACTTTTTATACAGTTGTTTTTAAAACAAAATCCTAAACATTCAGTTTTACCAAATGACAATTCAGGGCCTAGTTGCTGTGGGGAAGCCTGCTAGCTCAGAGAGGCAGAGAAAGCACCCAGCTGACCCTCCTCCTCAACCAGTGTCCCAGAAGGAAAAAAAAACAACCCATTTCTTCTCCACAGTCTTGAAAACCCTTCCAACTGAATGTCCCTCCTTTCTACCTCCTGTGTGTCTCTCTGTCCGTCCTCCTGATTTCCTCTCAATCTCTAGTTTTTTCCTTTGTTCACTCTCTGTCAACTGGTTGCTTGCTCTGCCTGTGACCTTTGGCTGGCTTTATTCAGTCTTGTTTACAATAAACAGAAAGCTCTCGGATTAAGGATGTGTGCCAGGGCTCAGCCACACAACAGCTAGAAACAGGCTTTTCCAGTACACAGTCTCACAGTGTGATCAAATACCCTGCACACTCTTAGATTAAAGGTGTGTCCTACGACTGAGCCGTGCTGAAACTAGAGACAGCCTTTAATATCCGGGGTCACAGTGTGATCAACAAGAAATCAGGGAAGTTGACATTTTGAGGTATTTTCCATGTGTCTTCGACTGTCTTACTTTGATGTGCTGTGTTCTCAGCAGCGCAGGGCTGTGCTGTCATAATAGAGGCTTGTAACTACTACAGGGGGATAATTACCTGGTAGTGTCCAGATCATTCTGCACACACTTTTAGGGAAATTATCAGATTATTAAAATGTACATTTGAACTTAAAAAGTTTTAAGCTTAGCATTCAAGCAAACACAGCAGTTAAATTTTCCATCTTCCAGTATTTTATCTTTCTTTTTCAG
Seq C2 exon
CTTCTCTTCTATTCTGGCTTATAAAATTCCAAAAGAAGATGTCCAGTCTCTCTCACAGTCCTTTGCTAAGTTGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378:ENSRNOT00000005848:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCATTGGAACAGTACAACATCT
R:
CTTCCTCCAACTTAGCAAAGGACT
Band lengths:
230-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]