RnoINT0011129 @ rn6
Intron Retention
Gene
ENSRNOG00000039890 | Abcg3l3
Description
ATP-binding cassette, subfamily G (WHITE), member 3-like 3 [Source:RGD Symbol;Acc:1564709]
Coordinates
chr14:6089419-6091563:+
Coord C1 exon
chr14:6089419-6089508
Coord A exon
chr14:6089509-6091438
Coord C2 exon
chr14:6091439-6091563
Length
1930 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
GGAGACTTTTGTTTCTGTAGACA
3' ss Score
4.65
Exon sequences
Seq C1 exon
AGCTGGGCTGCTCTTCTTTCTCACAGGCTTTGAATGTATCTTAAGTGTGTCTGCAGGGGAGCTCTTCCTCCTTGACAGGAATCACTTTCT
Seq A exon
GTGAGTAGCCCCTGCTGTACCCGACATCCGCAGCTGGTGATAAAGTTGATTACATGGTTGTTGGGCCTAGAACTTAATCTCATAAATTGCCATATGATTTTATTTTCTTCATTTGTTTAGTTGAAAAGTATCCAAATAATGGATTATTATACTTAGCATGTAGAGATGACTAACATTAAATGAAGAAATGGTGTTGATCATTTCCCAAGAGCAGAGGATGTCGAGGTTTGGTCTTTCGCTGTGTATTGTAATGCTAAGTACAGGTCTCTTAAGACATGGTTGCTCCAGAGAAGAGAGAATCCTCACATAGACTCAAGTGACCCTATGAGACCTTGTTGCAAGTTACTTCTGACTGGTAAATAAAGATGCCCACAGCCAGTAGCTGAGCACAAGAGATAAGAGGGGGTTTAGTTAGCGTTCCTGGCTTGGATGACTGAGAACTGTGAGGGGGAGAAGAAGGTGAAGGAAAAGAGAGAGCAGCCATGGGTTAGGTGAGTCATAGCAACATGGCCTTGAAGGCTAGACAATTGGAGTTGAGAGCAGCCACAACAGAACATTGTAAATAATAACATGGGGCTATTGATAGACAAGTAAATTCTAACAGCATAAAGGGAAGGTATCTTTCAGTTCTTGTGCAGTTTAAGTCTTATTTTAAAGAATAAAAGTTGTGCATCTTTTACCTGGGAGCTAAATAATCATACATGGAATAGAAACTCCAAAAGTGGGATTAAAATATTCAACAACACAGAGATATCTGCAGTTCATAGTTGTAAGGTTGGAGTGTAATCACCAGGTCTCTGTGCTGTAGACAAAGCAACAATAGAAGGATAAAAATCACAATTCACTCATAACCCCCTCCCCCCAAAAAGATATCAGTTTTTTGATAGAGCTTAAGTGTAGTAGTTTACAGGAAATTGGAGCTGGAGAGGTAAAGCTTCACAAGAATGAGGGTGTGCAGCCCCCTTGGACGAAGGGCAGGAAAGGGCCAGAGAGATGCTCTAAGTGAACAGCTGTCTGCTCTCCTGTGCTTTTCAAACATGGAAGAAGACGTCCCTTATGCTCTATGCTTGGGATTCACTGCTTTCAAAGATGGGCAAAATTTGGCTAAAAGTGTGTGCCAAGGAAAGAATCATCAAGAGGAGCTGAGGGCATAGCTCAATTGGTAGAGTGCATGTATGAATCCATGGGGTAGATTTACAGTACCATATAAACCTCAGCATGGTGATATTCCTATTATCCCAGAGTGTGGGGCAGGAAGACAGTCATTTTTGTTATATATGGAGTTTGAGTCCAGCCTACAATAGTGGTCCTTTCTCAAGAATAAAATAAAGTCAGAGATGTATTGAAGACATTGGCAGGGGAGGAGCCTGGAGTTTGGAATGGCTTAGGGATAGGTGCCAGGAAGGGGAAAGGACTAAGTTTGGTACCTTGCAAGGATTCACCTTTGTAAACAGATTAGTGAAGGAAAAAGTCTATCCTAAAATGAGAGAAGCTGAAGAGAAGGATGTAGTGGCTGAAGGGTGACCTCAGAGGGACTGTGTCAACTTCTTCATGCAAAAGGTCTAAGAGGAGTCTCCATGACTACTGCCTGAAGTGAGGTACTGAGAGCTGAAGTACCTCAGGGAGCCAGCCTCAGAGGAGCAGAGTCTCTGAGGAGAGTGCGAACATCAGACTGTTTCCCTGCAGGGGCTGTTCTGTGGCCTAGTGGACCAAACAGGATTTCTCTGATTAGAGTCACAGTGAAAATGCCACAAGGATGGGGGCCTTGAGATGCTGGTTTAAAGGATGGGAGGTATATGGGAGTTGCCTGAAGCACTGGGACACTGTCTTCCTAGTCTCCCTGTAGTATCAGAAGTCAGGCTGGCCAGCACCTCACCTGTGCTTGCTGGACCAATCTATGGATGTATAATGGAGACTTTTGTTTCTGTAG
Seq C2 exon
ACATGAGCACACCAGTGGATACTACAGAGTGTCATCCTATTTCTTTGGAAAACTGCTGGCTGAGCTAATACCCAGGAGGCTGTTGCCAAGTATGATATTTACTCTTATAACATACTTCATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039890:ENSRNOT00000061267:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106119=ABC2_membrane=FE(14.2=100)
A:
NA
C2:
PF0106119=ABC2_membrane=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]