MmuINT0008825 @ mm10
Intron Retention
Gene
ENSMUSG00000029299 | Abcg3
Description
ATP-binding cassette, sub-family G (WHITE), member 3 [Source:MGI Symbol;Acc:MGI:1351624]
Coordinates
chr5:104951517-104953173:-
Coord C1 exon
chr5:104953084-104953173
Coord A exon
chr5:104951642-104953083
Coord C2 exon
chr5:104951517-104951641
Length
1442 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
AAGGACTTTTGCTTCTGTAGACA
3' ss Score
5.41
Exon sequences
Seq C1 exon
AGCTGGCCTACTTTACCTGCTCACCATCTTCCAGTGTATCACAAGTGTGTCTGCAGGGGAGCTCTTTGTGATTGACAGGGTTCGCTTTCT
Seq A exon
GTGAGTAGTCCCTGCTGCACTAGGCATCAGCACTGGTGACCAAAACCATTACATTCATAGTTGGACCTAGAGCTTTATCTCATGAGTTACTAGTATTTTTCCATGCTTGTCTTAGTTGAAAAATTAACAAATTATGAAATTTTATGCTTATCACATGGCATCATGTGTTTTGAAGTACATGTAGAAATTGCCAATATTAACTGCAGAAACATGTGGGAATTCAAGAGCAGAGGTAACTGCAGCTCAGTGGAAGTTTCAAAGTTGGGATGTGGTCACCAGGTCTCAGTGCTATAGACAAAGCAGCAGTAGGGGAATCAAAGTGATGATTCATTCATGAAGCCCTAAAATGATGTCAGGGCTTTGATAGAGCTTAAGTGTAGTGGGTTTAGCAGCAAAGGATCAGAGAGTTAAAGCTGCACAAGAATAAGAGTGTGCAGCCCCCTTGGGTGAAGGACTAGAAAGAGCCAGCAGATGCTCTATAGTGAACAGCTGTCTGTCTTGTGCTTTTCAAACATGGAAGAAGACTTCCCTGGTGGCCTATGCTTAGGTTTCGTGGTTTCAAAGCTGGACAAGATTTGCCTACAAGTGCATACCAAGGAAAGGACCATTAGAGTGAATCCAAGTGAATAGCTCAGTTGGTAAAGTGCTTGTATGAAACCCTGGCGTAGATACACATCACCACATAAACTTCAGCTGGAAGATATTCTTGTAATGACAGCACTTGTGGGTGGGGCAGGAAGATTGTCATTTTAACTACATATGGAGTTTGAGGCCAGTCTGCACTAGTGGTCCTTTCAGTAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATCAGCGAAGCAATGAAGACACTGGCTTGGAGTTTGGAATGGCTTAGGGATAGGTGCCAGGTCGGAGAAGGACTGGGTGTGGTAGGTGGAAAGGATTCATGGTTGTAAACTGAGATTGGTGAAAGAAGAAGTATTTCCTAAAATGAGATGCCGAAGAGAAGCAGGTAGTAACTGCAGCGTGACCTCAGAAGGCAAGTGTCACCATCTTTGTAAGAAGGGGATGGAGAGGAGTCTCCATGACCACTGTTCTGAGAGCTGAAGTACCTCAGTGAGCCAGCCTTAGAGGAGCAGAGTCTCCGTAGAAAGTGGAAACATTGTACTCTTTCCTTGCAGGATCTGTTCTGTGGCTTAGTGGACCAAACGGGATTTCTCTGATGGGAGTCACAATGAGAATGCCATAAGGATGGTGGCGGAGGGATGCTGGTTCTAAGACGGGAGGTGTATGGGAGTCAGCCTGGAGCACAGGGACATTGTCCTCATAGGTTCCCTGTGGTATCAGCAGTCAGCATAGCCAGCATCTGACCTGTGCTTGCTGGACTAACTTCTTAATAATGTATAACAAGGACTTTTGCTTCTGTAG
Seq C2 exon
ACATGAGCACACCAGTGGATACTACAGAGTGTCATCCTATTTCTTTGGGAAATTGCTGGCTGAGCTAATACCCAGGAGGCTTTTGCCAAGTACTGTATTTTCTCTAATAACATATGTCATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029299:ENSMUST00000031239:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106119=ABC2_membrane=FE(14.2=100)
A:
NA
C2:
PF0106119=ABC2_membrane=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCTACTTTACCTGCTC
R:
AAAATACAGTACTTGGCAAAAGCCT
Band lengths:
190-1632
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types