HsaINT0001569 @ hg19
Intron Retention
Gene
ENSG00000118777 | ABCG2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 [Source:HGNC Symbol;Acc:74]
Coordinates
chr4:89020476-89022471:-
Coord C1 exon
chr4:89022382-89022471
Coord A exon
chr4:89020601-89022381
Coord C2 exon
chr4:89020476-89020600
Length
1781 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TACGTATTTTTGTTCTATAGACA
3' ss Score
7.25
Exon sequences
Seq C1 exon
AGCTGGGGTTCTCTTCTTCCTGACGACCAACCAGTGTTTCAGCAGTGTTTCAGCCGTGGAACTCTTTGTGGTAGAGAAGAAGCTCTTCAT
Seq A exon
GTGAGTAGGTCTTTGTTCTGGGAACGGGGCTGTCCAGCAGCAGGGGCTATTGGTTAGACTGATTACATCTGGGGTTGGGGCCAAGGATGGGATCCGGAGGATTACCAGTACTTTTTAAAATTTATTTTTAAATTGATGAATAAAAATTGTATATATTGATCATATACAACATGATGTTTTGAAAATATGTATAGGGGTTACCAATATTCATTGAGAAAAAGCAGCCAGAGGTAGGGAAGAAAATCCTGAGCCTTTGGGACCTGATATCCAGAGAAAAGAGTTTTTCTAGATTTGAGTACAGTCAGAAAATCCAAATGTTGGAGAGAGCAAGCAATAAAGGGACTGAAAAGTATATTTTGTTTTTAGTAAATACTGATGACCTTCACAAGAAAAGTTTGAGGGGCTTGGTAGAGATTAAGCAGCAACTTGGAAGTGGGGAGATTAAGTCGACAAAGAACGTGACCATGCTTAGCCCTCGGTGGACCAGGGAAGTGGCACGAGCCGGAAGGCATTCTTACAGTAAAGAGCAGCCTGGTTTAATTTATTGTATTTTCCTATTTATTTATTTATTTATTTTTTGGAGACAGGGTCTTGCTTTGTCGCCCAGGCTGGAGTCCAGAGACATGATCATGGCTCATTGCTGCCTTGACCTGCGGGGCTTACGCAGTCCTCCCATCTCGGCCTCCTGAGTAACTGGCATGCCTAGCTTTTTTTTTTTTTTTTGACATAGAGTCTCGCTCGCTCTGTCTCCCAGGCTGGAGTGCAATGGTGCAATCTTGGCTCACTGCAATCTCTACCTCCCGGGTTCAAGCGATTCTCCTCCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCCGCCACCACACCCAGCTAATTTTTTTGGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCCCTTTGGCCGCCCAAAGCACTGGGATTACAGGCGTGAGCCACTGCACCGGGGCGCCTGGCTGTTTTTTTTTTTTTTTTTAATTTTTTTGTAGAGAGAAGGTCTCACTATGTTTCCCAGGCTGGGTATTTTTCAAGGATGGATCACATTTTCCCAAATGTACATGTCACATATAGGAATTATTAGAAAGGGAAATAATGAAGGAAGTGGAAGAGTTTGGAATTGTGGGAGAAAGATGTCAGGAAGAGGAAAGATTACAATTTGGTAGTTGACAGGGATGTATGGCTGGAAGACATGATCATTGAAAGAAGAAGTCTTTTTCTTTTTTTAACTTGGGAGTAGAAGAAGTAAGAAGAGCTTAGTCATCTGAAGCTGCACTAGGGGGCTTGGAGAATAACAGGCCACCTTCCTCATCAGAAATAGGGAAAAAGAAAAGCTTCTATTCCTGCCAAAATCGGCTACTGAAGTGCTGTTCTTCAAGGAAAGCCCCCGTCAAAGAAGGAAAAGAAGCATTCTTTGAAGAGAGGGAGGATGTGTGGAATCTGTTTCCCTGGACTGAGTGTTCAGGAGCTAGAAAGAGCAGCAATAGGAGGGAACAGTGTCATGAGAAGAGGGGCTGTGCGCAGAGCTTCATGGGATGCTTTCTCAGGGAGGCTGGCACCCAAGGTATTCATGGGCATGCATAGTGGGTCTAGCCCTGAGGATGTGGGAAGCTGGCTTGTTCAACCCCTGCTGTCAGCAGAGGTCTGTAACAGACAAGTCTAGCCTGCCCTGTGGCTTCTTAAACTAATCTTGGATGTATGATACGTATTTTTGTTCTATAG
Seq C2 exon
ACATGAATACATCAGCGGATACTACAGAGTGTCATCTTATTTCCTTGGAAAACTGTTATCTGATTTATTACCCATGAGGATGTTACCAAGTATTATATTTACCTGTATAGTGTACTTCATGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118777-ABCG2:NM_004827:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106119=ABC2_membrane=FE(14.2=100)
A:
NA
C2:
PF0106119=ABC2_membrane=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)