MmuINT0008810 @ mm9
Intron Retention
Gene
ENSMUSG00000029802 | Abcg2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 [Source:MGI Symbol;Acc:MGI:1347061]
Coordinates
chr6:58633224-58634451:+
Coord C1 exon
chr6:58633224-58633313
Coord A exon
chr6:58633314-58634326
Coord C2 exon
chr6:58634327-58634451
Length
1013 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TATGTTCTGTGTTTTTATAGACA
3' ss Score
9.82
Exon sequences
Seq C1 exon
AGCTGGAGTTTTGTTTTTCCTGACTACCAACCAGTGTTTTTCCAGTGTGTCAGCTGTGGAGCTGTTCGTAGTGGAGAAGAAACTCTTCAT
Seq A exon
GTGAGTATCTCAAATTGGTCACATTCACAATTGGGTCAAAATACCATCTTGGGGTTTTCAGTGTCTCTTATTTGTCTGTTTAATTACATGTGTATATATTTGTGTTATACAATATGGATTTTTGAAAATGCATAGGATTACAGTATTGAGAAATGGCAGTCCCAGGGAAGATGGAAAAGGAAGTAACCAGAGAGAGGAATTTCAAGGTTGGGTTGTGGTTTGGAAACCTCAGTGCTGTGAGAGAAAGCACAACAGCAGAGCTCAAAGTATCTTCTTCTGGTTAGTCACACATTGATACGGGGCTTCAGAAGAGTTAGGTGGGTCAGCAGCTAGAAGTGGGTCAGTAGGGCAGAGAGCAACTACATGCCTTTCACCTATGTCTCTCAAAGGTTGGAGAGTTTTGTTTTTGTTTTTGTTTTTTTTTACTTTTATATTTGCCAACAAAAATGGTGGAAGAGTTTAGAATAACTTGAGAAAGAGGTTAGATTTGGTATCTGGCAATGCTATAACATTGTATGGTATGACTTTGGAAGGAAGAATTTTTGCTTAAAAAAAAATGTGAGTAGCAGAAGCTAAAGGACTCATGAGCTGAAGCTGCACTGAGGACCTTGGAAAGTAACAGCTTCATCTTCTTTGTCCTGAGTAGCAGAAAAGCCTCTGTAACTGGAGATGAACTTCTGAGGTACAGCTCTCCAGAAGAACCCAGCATCAGAGAAGCAGTCTCTAAACAAAACAAGTGTGTATAGATAGACACGGTTTCCCCAGAGGGAGGTCTTCAGGTGCTGGATTGCATAACAGCCAGAGGAACTATTGTAAAGAGAGTGGGCTACAGTCTGAGAGCCTCCTGAAGCTGAGAGCATAGAAGTTGGCCCCTAAGATGGCAGAAGACATGGGGGTCAGCCTGGAGCATGTGGGCGCTGCCTTACTAGAAATCTAGTGGAGCAGCAAGAAACCAATCTTCTGTTCTGTACCTTTGTAGACTAATGTGGGATCTATGTTCTGTGTTTTTATAG
Seq C2 exon
ACATGAGTACATCAGTGGATATTACAGAGTGTCTTCTTACTTCTTTGGAAAGGTGATGTCTGATTTACTCCCCATGAGGTTCTTGCCAAGTGTTATATTCACTTGTATATTATACTTCATGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029802-Abcg2:NM_011920:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106119=ABC2_membrane=FE(14.2=100)
A:
NA
C2:
PF0106119=ABC2_membrane=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGTTTTGTTTTTCCTGACT
R:
GTGAATATAACACTTGGCAAGAACCT
Band lengths:
191-1204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: