RnoINT0011102 @ rn6
Intron Retention
Gene
ENSRNOG00000007041 | Abcg2
Description
ATP binding cassette subfamily G member 2 [Source:RGD Symbol;Acc:631345]
Coordinates
chr4:88880568-88882663:+
Coord C1 exon
chr4:88880568-88880657
Coord A exon
chr4:88880658-88882538
Coord C2 exon
chr4:88882539-88882663
Length
1881 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
TGTGTTCTGTGTTTTTATAGACA
3' ss Score
10.26
Exon sequences
Seq C1 exon
AGCTGGGGTTTTCTTTTTCCTGACTACCAACCAGTGTTTTACCAGTGTGTCAGCTGTGGAGCTCTTCGTAGTGGAGAAGAAACTCTTTAT
Seq A exon
GTGAGTATGCCAGACTGGTCATATCCACAGTTGGGTCAGAATACCAGACTAGTGTTATCGGTTTCTTTTATTTATTCGTTTAATTGCATGTGTATATATTTCTGTTACACGATATGTTGGAGTTTTAAAAATGCATAGGATTACAGCATTTAGAAAAGGCAGTCCCAGAAAAGGTGGAAAAGTAAGAAAGTATGGTACCTGCTATCTAGAGAGAGGAGTTTCAAGTTTGGGTTGTGGTTCGGAAACCTCAGTGCTGTGAGAGGAAGCACAACAGCAGGGCTCAAAGTATCTTCTCCCAGCTAGTCACACATTATTAAAGGGCTTCAGAAGTATTAGGTGGGCCAGCAGCTAGAAGTGGGTCAGTAGGTCAGAGAGCAACTACAAGCCGTGGTGGACAGCGACCTGGAAAGAGCCAGCTTTGCAGCAGGGACCTGGATGGTTTTTCTTTTTTTTTTTTTATTGGATAGTTTATGTATTTACATTTTAAATGGTATCCCTTTCCTGGTTCCCCCATCTCCCATCCCTCTTCACCCTGCTTCAATGAGGATGCACCCCCCCACCCACTCCCGCCTCAACACCCTGGCATTCCCCTACACTGGGGAAATGACCCCTCACAGGACCAAGGATCTCTCCTGTTGATGCCAGACAATGCCATCCTCTGCTACATATGTGGCTGGAGCCATGAGTCCCCCCTTGTGTACTCTTTGGTTGGTGGTTTAGTCCCTGAGAACTCTGGGGGAGTCTGGTTGATATTATTATTCTTCCTATGGGGTTGCAACCCCTTCAGCTCCTTCAGTCATTTCTCTAACTCCTCCCCTGGGGCCCCTGTGCTCAGTCCGATGGTTAGCGCCAAGCATCTTAATCTGTATCAGTAAGGCTCTGGCAGAGCCTCTCAGGAGACATCCATCAGGCTCCTGTCAGCAAGCACTTCTTGGCATCAGCAATAGTGTCTGGGTTTGGTGGCTGTATGTGGGATGGTTCCCAGGTGGGGCAGTCTCTGGATGGCCTTTCCTTCAGTCTCTGCTCCACACTTTGTCCCTGTATTTCCTCCCGAGAGTATTTTGCTCCCCCTTCTAAGAAGGGCCGAAGCATCCACATTTTGGTCTTCTTTCTTCTTGAGCTTTCATATGGTCTGTGAATTGTATCTTGGATATTCTGAGCTTTTGAGTTAATATCCACTTATCAGTGAGTGCATACCATGTGTGTTCTTTTGTGACTGGGTTACCTCACTCAGGATGATATTTTCTTTTTCCTGTGTTTCTCAAAGGTTGGAGAGATTTTTCTCACCTTTATATTTGCCAATAAAAGGAACCAATAGAGAGCAAAGGAAGAAAGACATTGGTAGAAGAGTTTAGAATCATTAGAGAAAGAGGTCAGGAAGAGGAGAGATTAGATTTGGTATCTGTCAATGTTACTAAGGTCATATGGTATGACTTTTGAAGGAAGAAGTTCGGCTTTAAAAAAAAATTAGAGTAGTGGAAGCTAGAAGAGTCATGAGCTGAAGCTACACTGAGGACCTTGGAGAATAACAGCTTCATCTTCTTTGTAATGAGTAGCAGAAAAGCCTCTGTAACTGGAAATGAACTTCTGAGGTACAGTTCTCCAGAAGAACCCAGCATCAGAGAAGCAGTCTCTGAGCAGAACAAGTATGCACAGACTATGTTTTCCCAGAGTAGAGTCTTCAGATACAGGATTGTATAACAGCCAGAGGACGTGCTGTGATGAGAGAGGGCCATAGTCTGAGAGCCTCCTGGAGCTGAGAGTACAGGAGTTGACACCCGTGGGATGTTTCCTTACTAGAAATCTAGTGGTACAGCAGGCAGCCCATCTTCTGTTCTGTGCCTCTAGACTAATGTGGGTCTGTGTTCTGTGTTTTTATAG
Seq C2 exon
ACATGAGTACATCAGTGGATATTACAGAGTATCTTCTTACTTCTTTGGAAAGCTTGTGTCTGACTTACTACCTATGAGGTTCTTGCCAAGTGTTATATACACTTGTATATTATACTTCATGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007041:ENSRNOT00000009546:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106119=ABC2_membrane=FE(14.2=100)
A:
NA
C2:
PF0106119=ABC2_membrane=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGGGTTTTCTTTTTCCTGA
R:
TGTATATAACACTTGGCAAGAACCT
Band lengths:
191-2072
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]