RnoINT0011133 @ rn6
Intron Retention
Gene
ENSRNOG00000039890 | Abcg3l3
Description
ATP-binding cassette, subfamily G (WHITE), member 3-like 3 [Source:RGD Symbol;Acc:1564709]
Coordinates
chr14:6074513-6075268:+
Coord C1 exon
chr14:6074513-6074627
Coord A exon
chr14:6074628-6075115
Coord C2 exon
chr14:6075116-6075268
Length
488 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GAATTCCATTTGCTCTTAAGAAT
3' ss Score
2.68
Exon sequences
Seq C1 exon
GTTATTAGATGTCTTAGCTGCAAGGAGAGACCCGTGTGGATTATCAGGAGATATTTTGGTAAACGGTAAACCTCAACCTGCTAATTTCAAATGTACATCTGGTTATGTACCACAA
Seq A exon
GTAAGTGTTGGTGGGTTGCAATTTTAGACCTCTTCTGCTTGGCCATAGGCAGGTGCTCAGCTTATAGACTTGTGTCTTTCCAGTTAAGTGTATGACATACTCATAGGCCCCACTTTTTCCATGCTAGCACTTTGTAGGGAGTCATTACCCTGAGTCTGACATCTGTGGCTCAGTGTTAGTAAGAACAGCTGTGACTTAGTCTAGAGGACCACTGTTGTCTACCTGTGTTCTTCCTCCAGCTTTCTACACTCCTAGAAGATGTCTTCTGCAAATAACTGCAGGCAGGAGACACCAAAATTCCTGTCCTCTTCTTGGGAGGCAAATGGGAGGGGGAAGAAAACATTTGGACCAGGCTCTGAGCTTGGGATTAGTGAAATTGAAAGTTTAAGTGCAGCATTACACTGGGTGTGTTGTTTGTGTGGCCTAGGTTACATTTGTTAGAGTCTTAGTGGTAACTATATCTAATTAGAATTCCATTTGCTCTTAAG
Seq C2 exon
AATGATGTGATCATGCACACGGTGACCGTGAGAGACAATTTAGAGTTCTCAGCAGCTCTCCGTCTTCCAATGACTATAACAAGAAATGAAAAAAGAAGGAGGATTAATGAGGTGCTTGAACTTCTGCATCTGGAAAAAGAACAAAATACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039890:ENSRNOT00000061267:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(28.1=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(37.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGATGTCTTAGCTGCAAGGAGA
R:
TGGTATTTTGTTCTTTTTCCAGATGC
Band lengths:
262-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]