HsaINT0001576 @ hg38
Intron Retention
Gene
ENSG00000118777 | ABCG2
Description
ATP binding cassette subfamily G member 2 (Junior blood group) [Source:HGNC Symbol;Acc:HGNC:74]
Coordinates
chr4:88131061-88131917:-
Coord C1 exon
chr4:88131803-88131917
Coord A exon
chr4:88131214-88131802
Coord C2 exon
chr4:88131061-88131213
Length
589 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
AAAATGCTATTTGCCTTAAGGAT
3' ss Score
4.72
Exon sequences
Seq C1 exon
GTTATTAGATGTCTTAGCTGCAAGGAAAGATCCAAGTGGATTATCTGGAGATGTTCTGATAAATGGAGCACCGCGACCTGCCAATTTCAAATGTAATTCAGGTTACGTGGTACAA
Seq A exon
GTAAGTATTAGTGGGTTTGCATTTTCTGTTTCCTCTGTTTCTATATGGGTAAGTGCTTTGGCTGATAGTTCAATGTGCTTCCAGTTGATTATGTGACATGGTCCTAGAACTGACGTTCTTTACAGCAGCTTTTCTTAATTTCTCATAGACACTTATGTGAAAAGGCAGGGAGAATCTGGAATATGGCCCTTGTAAGGACAGTGATACCAATTCTAGTTTTTGTATCATTTCTAAAATGATACATACTACTGTTATCCTTTTTTGCCTTTCCTTCACCTTTCTTTTCCCCTAGCTTAGAAAGATATTTTGGCAAATCCTTGTATGAAGCAGTTTGGAAATGTCTGCTGGTAGTTAACATAATTACTTGCATTCTATTTGGGTGTACAGATAGGGGGTGAAAAATGATTATAGCAGGCTTTGCAGACATCTATGGAGTTAACTGTCATTTGCAGAACTGCAGGTTCATCATTAGCTAGAACTTTACCTTAGTTATGTTATCTTTGTGGATTATGTTATGTATACTAAACAGTCATGGTCTTAGAAAAGACTCATTATCATTATGTCTCATTAAAATGCTATTTGCCTTAAG
Seq C2 exon
GATGATGTTGTGATGGGCACTCTGACGGTGAGAGAAAACTTACAGTTCTCAGCAGCTCTTCGGCTTGCAACAACTATGACGAATCATGAAAAAAACGAACGGATTAACAGGGTCATTCAAGAGTTAGGTCTGGATAAAGTGGCAGACTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118777:ENST00000237612:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(33.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTCTTAGCTGCAAGGAAAGA
R:
CTTGGAGTCTGCCACTTTATCCA
Band lengths:
262-851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development