GgaINT0042861 @ galGal4
Intron Retention
Gene
ENSGALG00000005792 | ABCG2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group) [Source:HGNC Symbol;Acc:HGNC:74]
Coordinates
chr6:17105462-17107797:+
Coord C1 exon
chr6:17105462-17105576
Coord A exon
chr6:17105577-17107644
Coord C2 exon
chr6:17107645-17107797
Length
2068 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TATCTTGGTATTGCTTTCAGGAT
3' ss Score
8.19
Exon sequences
Seq C1 exon
TCTGCTAGATGTGCTGGCTGCCAGAAAGGACCCAGCAGGCCTGTCTGGAGAAGTGCTCATAGATGGCATCCCACAACCTCCAAACTTCAAGTGCATCTCAGGATATGTTGTGCAG
Seq A exon
GTGAGTAACTGCCTTCAGTGGAGGCTGGGAGCCCTTAGGAGGGGTAGCATAGCATAGGCTTTGGTGGAAAGACTTTGAAAAATCTCCTCCCTGAGAAGAGAGGAGGGATTCACTGGTGGGAGCTCATCACTGCTTCATGAATGAGAGATGGCGTCTCCTCTGGTGAGCAAGTAGGGCTGTGGTGGGACAGGAGCGGCTTCTCAAGAAGAAAGGTAGAGCTCTGTCACATAAGTTGAGCAAAGCGTGAGCTATTAGTTTAGATAATATTTAATTATCTGTACAGACTTAATTTGGTAACAGATGTTAGTGTTTTTCCTGTGATTTGAAAGGCAGAGGGTCAAACTGCTTACTCCAAGTAAAGCATGAAGGTGTTGGTCCTCCTAAAGCCACATGGGTGTCCAGGCCACTGTGTTTGTTCTCTGGGGCTCTGCCCTGAAGTTCCAGCAATGACTTTAAAAATAAATTAAGTTTAAAAAAAAAAAAAAGTTGCATGGTAGGAACCTCTCAACACCTAAAATGTCTTATAAAACTCTAAAGCAGCCCTAGTTGGCAGAAGTAACTTCAAGCTCTTAGATAATAATTCTAGGAAGTAAGTAGATCCTTGCTGTTCTTCCTCTGATTCTGGCTGGCTGAGGCAGAGCTTTGTTCCACTCGGACAGGAAAAGCCAGCTGAATCTGCGGAAGTGGGTGGGGGCCTGGACCAATAATAGACCCTCAAAGCCCTGGAGAAGCTGAGGATGGGATTCTTGGCAGCTGTATGAACTGCCAAATGTGAAAACCATTCAGACTTCTGACTGCAGGCAGATAGGAAATAGGCAGTCTTTCTGAAAGCTGCCAGCTGAGGGGCTTTTGAGCAGACGCATGATAAGACTGATGCTGAGACTTCATCTCACAGGGCAAAGATCCCTGAATCCTCAGTGTTTCATTAAAGGCCAGGAAGTTTCTTGCAAATGGCTCCAGTTTGAGACATCTGTCTCTCTGTTGTCAAAAGCAAACAAACCAAACCTTGAAATGATGAGCAACTAGGCTAGATGTTAAATGGCTGTTCTCCCCTCCCACCCTTGTGTGCTGTTCCATAGATAACGATGATTCCCTTGATAAAGATGACTCAGAGTGTCAAAACACACCTGAAGGCATAAATGCATACATCTGTTTTATGCAGATGAGCCTATAGACCTGCTAAATCATGTGTTACAAAACTGTTGATGATCTCTTCACTCCTGCCTTGCAAATGAGGATGTAATTCCACAGATTGGAAAGGTACCTGATTAACAGGCATGTTTCTCAGCAGTTGTCCAGTGCTGCATCCCTTCTACCACTATATGGTGGAATGAAGAATTGACTCAAATACCAAAGCAGAGGTGATGGAGAGGCATGGAGCTCTCGATGGAACTACTGTCAGCTCTGTTAGTAGTTGTTCCCGGTTGGCGTAGGCACATGTTTGTCAGCTGGATAGATCTGTTTCGTAGTCAAAATGCACGACTGCTGAAGCTTTGTTGGATTGTGGAATAAGGTCTTGTGCTTAAGAGGAATGGGTATGTGAAACATGGGAAAAAATGTGGGGCATCTTGGTGCAATAGTTTTGATTTTTTTTCTGGGGACCAGGGAGGAGGCTGCGAGGAACTTGTTGGCAGCTGGACTCAGCAGTTGCGTATGACCACAGCAAGTTGCAGCTCATAAGTGGGAACTGAGCAGACTCGAGTGACTCCCTGAATATCTCCAACCTGAATGCTGAGCACTAGCAGTGAAAACTCCCTGCTCTGCCTTCCTATGCCTTGTAAGGAAAATGCAAGATGATGCACTGTGCAGTGTGTACTCTTGAGCCCAAAAGCATGCTGAGGTGGTGCTGGGCACAAGCTGGGAGCCTGTAGAGCTGTGTTTTCCATCTGACTGCTACAGAGTGACCCTGAATTTTGTGTCCTGTATGTTTTGAAACAGGAGTTCTGACTTAGTCCAGTTTTCCCCATGGTCCACAAACAGCTTATCCAGTAACTACCACTACAGGGACTCCGGTGCCCAGTCAGGTAGCTGAGAACAAGGCTTTCACTTATCTTGGTATTGCTTTCAG
Seq C2 exon
GATGATGTTGTCATGGGCACAATGACAGTGAGGGAGAACCTGCACTTCTCTGCTGCCCTCCGGCTCCCCAGCTCCATCAGCTTTCAAGAGAAGGAAGAACGAGTCACACAGATAATTGGCGAGCTGGGATTAAGCAAAGTGGCTGATGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005792:ENSGALT00000009304:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(33.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]