RnoINT0011109 @ rn6
Intron Retention
Gene
ENSRNOG00000007041 | Abcg2
Description
ATP binding cassette subfamily G member 2 [Source:RGD Symbol;Acc:631345]
Coordinates
chr4:88862176-88862998:+
Coord C1 exon
chr4:88862176-88862290
Coord A exon
chr4:88862291-88862845
Coord C2 exon
chr4:88862846-88862998
Length
555 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
AAATGCCACCTTGCCTTAAGGAT
3' ss Score
3.96
Exon sequences
Seq C1 exon
GTTGCTAGATGTCCTAGCAGCAAGGAAAGACCCACGGGGATTATCTGGAGATGTTTTGATAAACGGGGCACCTCAACCTGCCAATTTCAAATGCAGTTCAGGTTATGTGGTTCAA
Seq A exon
GTGAGTATTAGTAGATTTGGGCAATATATGTGCAAGTATATTTGCTTATAGTATAGTTTACTTCCAATTGAATATATAACATGCTCACGGCATCTGTGTATTTGCATCAGGTTTTCATAATCATCCACTACACTGGCGGTGATATTAAGGGGAAGACAGTATACCTAATTATGACACTCGTGGGGCAGTGGCATCAGCTCTGGCTGATCTATAATTCCAACAACACAAGGGTTACTCATCGTTCACTTTCTTTCTTTCCATTGTTGATGTCTTTCCCAAATCCTCCCATCAGGTAGCCCTGAGATGGGTAGTAGGACTTTTGCAAGTGTCCTGTTAGGGTGTGTAGCTGGGTGATAAGAACGATGCCATGGAGCTTCGCATGTGTCCGTCCATGCAGTCACTGCACCTTGAGAGAACTTGTGGTTTACTGGTAGCCACAAGTTTTAAACTTGTAGTTTTACCTTACTGAGTTGTGTATATGGATTGGACTGTGTATACTCAAGTCATTGATATGGAAAGACTCTGTATCTCACTAAAATGCCACCTTGCCTTAAG
Seq C2 exon
GATGACGTTGTGATGGGCACCCTGACAGTGAGAGAAAACTTACAGTTCTCAGCAGCTCTTCGCCTTCCAAAAGCTATGAAGACGCATGAAAAAAATGAACGGATTAACACGATCATTAAAGAGTTAGGCCTGGACAAAGTAGCAGATTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007041:ENSRNOT00000009546:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(33.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGATGTCCTAGCAGCAAGGA
R:
TGGAATCTGCTACTTTGTCCAGG
Band lengths:
262-817
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]