BtaINT0011878 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017704 | ABCG2
Description
Bos taurus ATP-binding cassette, sub-family G (WHITE), member 2 (ABCG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001037478]
Coordinates
chr6:37994057-37995136:+
Coord C1 exon
chr6:37994057-37994171
Coord A exon
chr6:37994172-37994983
Coord C2 exon
chr6:37994984-37995136
Length
812 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
AAATGCCATTTTTCTTTAAGGAT
3' ss Score
7.27
Exon sequences
Seq C1 exon
GTTGTTAGATATCTTAGCTGCAAGGAAGGATCCACATGGATTATCTGGAGATGTTTTGATCAATGGAGCACCTCGACCTGCCAATTTTAAATGTAACTCAGGTTATGTGGTACAA
Seq A exon
GTAAGTATTTGTGACTTTACCTATTAGATTTCTTCTGATTTTTCATATGGGCAAGTGCCTTGGCTGATAGTTGAGTGTGCTTCCAATTGACTATATGACATAATCATAGAAACAACTTTTCTTTATACCCGCTTTTCATAATATCCTATAAGATTCAGAATCGTATTAAATGAAAAGAAAGTCTGGAATATGACCCTTGTAAGGGCAGTAGTATCAACTCTTATTATCATATCATTTCTAAAATACATTACTATTTTACTTTTTTTGCCTTACCCTCACCTCTCTCCTTCCCCTAGCTCAGAACAGTGTTATATAATCCTTGTGTAAAGCATTCTATAAATGTCTGCCAGTAATAATCATAATGACCTGTGTTCTCTCTTGGTATACAGGTTAGAAATGAAAATTAATCCATCAGGCTATGCAGCTGTCTGAACATGGAATTATTGTAATTTGTTTAATTGCAAGTTCATTATTGGGGCTTCCCAGGTGGCACAGTGGTAAACAATCCACCTGCCAATGCAGGAGATGCAAAACATGTGGGTTCCATTCCTGGGTCAGGAAGATTCCCTGGAGAGGAGAATGGCAACCCACTCCAATATTTTTGCCTGGCGTATCCCATGGACAGAGGACCCTGGCAGGCTACAGTCCATAGAATTGCAAAGAGTGGGACATGACTGAGCACACAACACACACAAGTTCATTATTAGCTAGAACTTGGGTATCTTATTTTTGTGGATAAGTTAGATATACTACAGAGTGATGGTATTAGAAAAGACCTGATATATCTTGTTAAAATGCCATTTTTCTTTAAG
Seq C2 exon
GATGATGTTGTGATGGGAACTCTGACAGTGAGAGAAAACTTACAGTTCTCAGCAGCCCTTCGGCTTCCAACAACTATGACAAGTTACGAAAAAAATGAACGGATTAACAAGGTTATTCAAGAGTTAGGTCTGGATAAAGTGGCAGATTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017704:ENSBTAT00000055044:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(33.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATATCTTAGCTGCAAGGAAGGA
R:
CTTGGAATCTGCCACTTTATCCAGA
Band lengths:
262-1074
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]